Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g01776 ATGCGGCCGTCCGACCCGTCAAATCCGTCGTATGTGGCTAGGATTGAGCGGATCGAAGCTGACTCGCGTGGCGCCAACGTGAAGGTCCACGTCCAGTGGTATTACCGGCCGGAGGAGTCAATTGGCGGGCGGAGGCAGTTCCACGGTTCTAAGGAGGTTTTCCTTTCTGATCATTTTGATGTTCAGAGTGCCGATACGATAGAAGCCACGTGTACGGTTCACAGTTTCAAGAGCTACACGAAACTTGATGCTGTTGGAAACGAGGATTTCTTCTGTCGCTTCGATTACAATTCCTCCACCGGTGCTTTCAATCCTGACAGAGTGGCTGTGTACTGCAAATGTGAGATGCCCTACAACCCTGACGACCTAATGGTCCAGTGTGAGAGTTGCAGTGATTGGTTTCATCCTACTTGTATAGATATGACTGTGGAGGAAGCCAAAGGGCTTGAACACTTCTTTTGTGAAAATTGTTCTGGCAATGGTCATCAGAATGCACAAAATTCTCATAGTTAA 513 0.4873 MRPSDPSNPSYVARIERIEADSRGANVKVHVQWYYRPEESIGGRRQFHGSKEVFLSDHFDVQSADTIEATCTVHSFKSYTKLDAVGNEDFFCRFDYNSSTGAFNPDRVAVYCKCEMPYNPDDLMVQCESCSDWFHPTCIDMTVEEAKGLEHFFCENCSGNGHQNAQNSHS 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g01776 170 Pfam PHD-finger 111 158 IPR019787 -
Accr1g01776 170 SMART PHD_3 111 158 IPR001965 -
Accr1g01776 170 Pfam BAH domain 3 106 IPR001025 GO:0003682
Accr1g01776 170 ProSiteProfiles BAH domain profile. 1 107 IPR001025 GO:0003682
Accr1g01776 170 SUPERFAMILY FYVE/PHD zinc finger 100 160 IPR011011 -
Accr1g01776 170 SMART BAH_4 1 107 IPR001025 GO:0003682
Accr1g01776 170 Gene3D - 1 105 IPR043151 -
Accr1g01776 170 ProSiteProfiles Zinc finger PHD-type profile. 109 160 IPR019787 -
Accr1g01776 170 ProSitePatterns Zinc finger PHD-type signature. 112 157 IPR019786 -
Accr1g01776 170 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 170 IPR013083 -
Accr1g01776 170 PANTHER OS08G0421900 PROTEIN 1 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g01776 Accr-Chr1 47916815 47918618 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g01776 7 109 Core DNA Replication Machinery Family AT4G14700 27.184 4.97e-09 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Accr1g01776 BAH 1.9e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g01776 K25868 - gmx:100787968 334.724