Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g01731 ATGTTGCGTTGTCTGAACAGTTCGGAAAATCTCCCTGAGTCCTGCTCTGCTATGACATTGTTAGAGAGGCAAAGAGACCGGATGAAATGGCAACTATCACAGTTTCATCATCATCATCCGAACCAGTGCTTCTTTTCTGGTAGTGGATTTGAGGGTGGGTTCTCGTCTCTGCAAGTTCCCAATCCAGGGGGGATGATGATGGTGACGAATAATGGCGGTGGCGGTTCTGGGCTTGGTGAGGCGGCTGCTAATGCCGGATCCGTGAAGCCCGACCCGGGTCTGGAAAATGGATGGTCCGAATTGGGCAAGGTGGACTTGCCTGGTGTGGGATTCGTCTCTTCTGGATTTAATGCCAGCTCTGCAATTTCAAGGACTTCTAGCTGCCCGCCATCTGTGGCGGCGGCGGCGGCGGCGGCGGAAGGCACGCCGACGGAGAAGATGAGATCGACAAGTGGGAGAGAGAGCTTCAAGAAAAGGAAATCTGAGAAAGCTCAGATCCCCAAGGCTGTTGTGGCCGAAAATGAGAAGAACAAGAAAAGCAAAACAAGTGGTGAGGAATTCGGGGAATCCAAAGTCACAACAACAGATAATAATCATAACAATAATGACAAGAACAGAGAAACATCAGTGGAATCTTCGAAAGAGAATTCAAAAGCGTCCGAGGTACAAAATCAAAAGCCAGACTACATTCATGTCCGAGCACGTCGAGGACAAGCCACTGATAGCCATAGCTTAGCCGAAAGAGCTAGAAGGGAAAAAATTAGCGAGAGAATGAAGTACCTGCAAAGTTTAGTGCCTGGTTGTAACAAAATCACAGGAAAAGCTGGCATGCTCGATGAAATAATCAATTATGTTCAATCTCTTCAACAACAAGTAGAGTTTTTGTCAATGAAACTAGCTGCCGTAAACCCAACGATTGACTTCAACATTGACGATCTGTTTACCAAAGAGGTTTTTCCAGCTTGTGCTCCCACGAGTTTCCCAGCCATAGATATGACATTGACACCTAATCCTGCTGCCTATCTTCAACAGTTTGATCCAACACATGTTGCTTCATGTTCCGGATTAGATATGGGCATTATTAACCCTCCAGATTTAGGGCTTCGAAGGACCATCAGTGCCCCTCTAGCTTTACCTCACGAAACGTTTCTTGACTCTTCCTGTTTCAATCAAATTATGCCATTTTCAACCGTTGAAGGTGATATACAGAACCTGTACAATGTGACTTTTGATCAAGCCAGATCAACGACGTCGTCTTTTCCTTCTCAGCCATTCACAGGCCTAATTGAAGCTAGCAATCTAAAGATGGATATGTGA 1317 0.4601 MLRCLNSSENLPESCSAMTLLERQRDRMKWQLSQFHHHHPNQCFFSGSGFEGGFSSLQVPNPGGMMMVTNNGGGGSGLGEAAANAGSVKPDPGLENGWSELGKVDLPGVGFVSSGFNASSAISRTSSCPPSVAAAAAAAEGTPTEKMRSTSGRESFKKRKSEKAQIPKAVVAENEKNKKSKTSGEEFGESKVTTTDNNHNNNDKNRETSVESSKENSKASEVQNQKPDYIHVRARRGQATDSHSLAERARREKISERMKYLQSLVPGCNKITGKAGMLDEIINYVQSLQQQVEFLSMKLAAVNPTIDFNIDDLFTKEVFPACAPTSFPAIDMTLTPNPAAYLQQFDPTHVASCSGLDMGIINPPDLGLRRTISAPLALPHETFLDSSCFNQIMPFSTVEGDIQNLYNVTFDQARSTTSSFPSQPFTGLIEASNLKMDM 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g01731 438 Gene3D - 235 307 IPR036638 GO:0046983
Accr1g01731 438 SMART finulus 244 294 IPR011598 GO:0046983
Accr1g01731 438 MobiDBLite consensus disorder prediction 137 228 - -
Accr1g01731 438 Pfam Helix-loop-helix DNA-binding domain 242 289 IPR011598 GO:0046983
Accr1g01731 438 MobiDBLite consensus disorder prediction 200 214 - -
Accr1g01731 438 MobiDBLite consensus disorder prediction 172 186 - -
Accr1g01731 438 FunFam Basic helix-loop-helix transcription factor 235 307 - -
Accr1g01731 438 CDD bHLH_AtBPE_like 228 313 - -
Accr1g01731 438 MobiDBLite consensus disorder prediction 150 166 - -
Accr1g01731 438 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 236 307 IPR036638 GO:0046983
Accr1g01731 438 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 238 288 IPR011598 GO:0046983
Accr1g01731 438 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 141 333 IPR024097 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g01731 Accr-Chr1 47361875 47364207 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g01731 149 406 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 44.161 4.48e-56 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Accr1g01731 HLH 1.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g01731 - - pcin:129293639 607.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr1g01731 1 47361875 47364207 Accr1g01731 1 47361875 47364207 ECH