Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g01674 ATGGCTCAGCCAACTTCCGACGCCCCCGATCTGAATCAGCAACCGCCGCAGCCGCAGCCGCAGCAGCAATGGACGCAGCCGCATCAGTATCAACAATGGATGAACATGCAGTATCCGGCTTCGGCTATGGCGATGATGCAGCACCAGATGATGATGTATCCGCCGCATTATATCCCTTACGTTCACCAATATTACCAGCCGCCTTACCACCAGCCGCACTTGAAACAGCCGCCGACACAGCCGCCGCACCACCAGCAAAACTCCAACGATGAGATCAAGACGATCTGGCTCGGTGACCTTCATCATTGGATGGACGAGAACTACCTAAATAGCTGCTTTGCTCACACAGGCGAGGTGGTATATTCAGTCAAGGTTATACGGAATAAGCAAACTGGTCAGTCCGAGGGATATGGATTTGTTGAGTTTTATACACGTACAACAGCTGAGAAAGTCTTACAGAGCTACCATGGTACTATGATGCCAAATACAGATCAGCCGTTTCGCTTGAATTGGGCTGCTTTCAGTTCGGGTGATAAGCGATCTGATGCTAATTCAGATTACTCTATATTTGTCGGGGACTTGGCTGTAGATGTTACTGATACTATGCTGCAGGAAACCTTTGCAAGCAGATATTCATCTTTTAAGGGAGCAAAGGTTGTCATTGATTCTAGCACTGGCCGTTCAAAAGGTTATGGCTTTGTTAGGTTTGCTGATGAAAATGAGAGATCCAGGGCACTGACTGAAATGAATGGTCAATATTGTTCAAGTAGGCCAATGAGAATTAGTATTGCAACTCCCAAGAAATCATACGGACATCAACAACATTACTCTTCACAAGCTGTGGTGTTGGCTAATGGATATTCTTCTAATGGTGCTATGGCCCAAGGTTCCTTGTCTGAAGGGGACTCTCTTAACACAACTATATTCGTTGGAGGGCTTGATTCTGACATCAGTGATGAAGATCTAAGACAACCATTTTTGCAATATGGTGATGTTGTCTCTGTGAAGATTCCGGTTGGAAAAGGGTGTGGTTTTGTTCAATTTGCTAACAGAAAGAATGCAGAGGAGGCAATCGAGGCATTGAATGGGATAGTAATAGGGAAACAGACAGTGCGTCTTTCTTGGGGTCGCAGTCCAGGAAACAAGCATTGGAGGTCGGATTCCAATGGAGGGCAAGGTTATGGTGCAAGACAGCATCAGGCATGA 1206 0.4635 MAQPTSDAPDLNQQPPQPQPQQQWTQPHQYQQWMNMQYPASAMAMMQHQMMMYPPHYIPYVHQYYQPPYHQPHLKQPPTQPPHHQQNSNDEIKTIWLGDLHHWMDENYLNSCFAHTGEVVYSVKVIRNKQTGQSEGYGFVEFYTRTTAEKVLQSYHGTMMPNTDQPFRLNWAAFSSGDKRSDANSDYSIFVGDLAVDVTDTMLQETFASRYSSFKGAKVVIDSSTGRSKGYGFVRFADENERSRALTEMNGQYCSSRPMRISIATPKKSYGHQQHYSSQAVVLANGYSSNGAMAQGSLSEGDSLNTTIFVGGLDSDISDEDLRQPFLQYGDVVSVKIPVGKGCGFVQFANRKNAEEAIEALNGIVIGKQTVRLSWGRSPGNKHWRSDSNGGQGYGARQHQA 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g01674 401 MobiDBLite consensus disorder prediction 381 401 - -
Accr1g01674 401 FunFam Polyadenylate-binding protein RBP47 288 401 - -
Accr1g01674 401 SUPERFAMILY RNA-binding domain, RBD 52 175 IPR035979 GO:0003676
Accr1g01674 401 Gene3D - 174 282 IPR012677 -
Accr1g01674 401 FunFam Polyadenylate-binding protein RBP47B 92 173 - -
Accr1g01674 401 CDD RRM1_SECp43_like 94 175 - -
Accr1g01674 401 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 187 266 IPR000504 GO:0003723
Accr1g01674 401 MobiDBLite consensus disorder prediction 377 401 - -
Accr1g01674 401 SMART rrm1_1 307 374 IPR000504 GO:0003723
Accr1g01674 401 SMART rrm1_1 188 262 IPR000504 GO:0003723
Accr1g01674 401 SMART rrm1_1 94 170 IPR000504 GO:0003723
Accr1g01674 401 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 95 163 IPR000504 GO:0003723
Accr1g01674 401 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 308 371 IPR000504 GO:0003723
Accr1g01674 401 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 189 259 IPR000504 GO:0003723
Accr1g01674 401 SUPERFAMILY RNA-binding domain, RBD 303 397 IPR035979 GO:0003676
Accr1g01674 401 Gene3D - 92 173 IPR012677 -
Accr1g01674 401 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 93 174 IPR000504 GO:0003723
Accr1g01674 401 FunFam Polyadenylate-binding protein RBP47B 175 277 - -
Accr1g01674 401 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 306 378 IPR000504 GO:0003723
Accr1g01674 401 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 82 382 - -
Accr1g01674 401 MobiDBLite consensus disorder prediction 1 28 - -
Accr1g01674 401 Gene3D - 289 401 IPR012677 -
Accr1g01674 401 CDD RRM2_SECp43_like 186 265 - -
Accr1g01674 401 SUPERFAMILY RNA-binding domain, RBD 172 282 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g01674 Accr-Chr1 46535734 46539834 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g01674 92 375 Eukaryotic Initiation Factors Gene Family AT2G23350 28.231 6.06e-26 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g01674 - - gmx:100814564 555.829