Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g01673 ATGGCTCAGCCAACTTCCGACGCCCCCGATCTGAATCAGCAACCGCCGCAGCCGCAGCCGCAGCAGCAATGGACGCAGCCGCATCAGTATCAACAATGGATGAACATGCAGTATCCGGCTTCGGCTATGGCGATGATGCAGCACCAGATGATGATGTATCCGCCGCATTATATCCCTTACGTTCACCAATATTACCAGCCGCCTTACCACCAGCCGCACTTGAAACAGCCGCCGACACAGCCGCCGCACCACCAGCAAAACTCCAACGATGAGATCAAGACGATCTGGCTCGGTGACCTTCATCATTGGATGGACGAGAACTACCTAAATAGCTGCTTTGCTCACACAGGCGAGGTATATTCAGTCAAGGTTATACGGAATAAGCAAACTGGTCAGTCCGAGGGATATGGATTTGTTGAGTTTTATACACGTACAACAGCTGAGAAAGTCTTACAGAGCTACCATGGTACTATGATGCCAAATACAGATCAGCCGTTTCGCTTGAATTGGGCTGCTTTCAGTTCGGGTGATAAGCGATCTGATGCTAATTCAGATTACTCTATATTTGTCGGGGACTTGGCTGTAGATGTTACTGATACTATGCTGCAGGAAACCTTTGCAAGCAGATATTCATCTTTTAAGGGAGCAAAGGTTGTCATTGATTCTAGCACTGGCCGTTCAAAAGGTTATGGCTTTGTTAGGTTTGCTGATGAAAATGAGAGATCCAGGGCACTGACTGAAATGAATGGTCAATATTGTTCAAGTAGGCCAATGAGAATTAGTATTGCAACTCCCAAGAAATCATACGGACATCAACAACATTACTCTTCACAAGCTGTGGTGTTGGCTAATGGATATTCTTCTAATGGTGCTATGGCCCAAGGTTCCTTGTCTGAAGGGGACTCTCTTAACACAACTATATTCGTTGGAGGGCTTGATTCTGACATCAGTGATGAAGATCTAAGACAACCATTTTTGCAATATGGTGATGTTGTCTCTGTGAAGATTCCGGTTGGAAAAGGGTGTGGTTTTGTTCAATTTGCTAACAGAAAGAATGCAGAGGAGGCAATCGAGGCATTGAATGGGATAGTAATAGGGAAACAGACAGTGCGTCTTTCTTGGGGTCGCAGTCCAGGAAACAAGCATTGGAGGTCGGATTCCAATGGAGGGCAAGGTTATGGTGCAAGACAGCATCAGGCATGA 1203 0.463 MAQPTSDAPDLNQQPPQPQPQQQWTQPHQYQQWMNMQYPASAMAMMQHQMMMYPPHYIPYVHQYYQPPYHQPHLKQPPTQPPHHQQNSNDEIKTIWLGDLHHWMDENYLNSCFAHTGEVYSVKVIRNKQTGQSEGYGFVEFYTRTTAEKVLQSYHGTMMPNTDQPFRLNWAAFSSGDKRSDANSDYSIFVGDLAVDVTDTMLQETFASRYSSFKGAKVVIDSSTGRSKGYGFVRFADENERSRALTEMNGQYCSSRPMRISIATPKKSYGHQQHYSSQAVVLANGYSSNGAMAQGSLSEGDSLNTTIFVGGLDSDISDEDLRQPFLQYGDVVSVKIPVGKGCGFVQFANRKNAEEAIEALNGIVIGKQTVRLSWGRSPGNKHWRSDSNGGQGYGARQHQA 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g01673 400 SMART rrm1_1 187 261 IPR000504 GO:0003723
Accr1g01673 400 SMART rrm1_1 306 373 IPR000504 GO:0003723
Accr1g01673 400 SMART rrm1_1 94 169 IPR000504 GO:0003723
Accr1g01673 400 SUPERFAMILY RNA-binding domain, RBD 302 396 IPR035979 GO:0003676
Accr1g01673 400 MobiDBLite consensus disorder prediction 376 400 - -
Accr1g01673 400 SUPERFAMILY RNA-binding domain, RBD 170 281 IPR035979 GO:0003676
Accr1g01673 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 93 173 IPR000504 GO:0003723
Accr1g01673 400 FunFam Polyadenylate-binding protein RBP47B 92 172 - -
Accr1g01673 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 186 265 IPR000504 GO:0003723
Accr1g01673 400 Gene3D - 92 172 IPR012677 -
Accr1g01673 400 FunFam Polyadenylate-binding protein RBP47B 174 276 - -
Accr1g01673 400 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 307 370 IPR000504 GO:0003723
Accr1g01673 400 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 95 162 IPR000504 GO:0003723
Accr1g01673 400 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 188 258 IPR000504 GO:0003723
Accr1g01673 400 Gene3D - 292 400 IPR012677 -
Accr1g01673 400 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 82 381 - -
Accr1g01673 400 FunFam Polyadenylate-binding protein RBP47 287 400 - -
Accr1g01673 400 Gene3D - 173 279 IPR012677 -
Accr1g01673 400 CDD RRM2_SECp43_like 185 264 - -
Accr1g01673 400 CDD RRM1_SECp43_like 94 174 - -
Accr1g01673 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 305 377 IPR000504 GO:0003723
Accr1g01673 400 MobiDBLite consensus disorder prediction 380 400 - -
Accr1g01673 400 MobiDBLite consensus disorder prediction 1 28 - -
Accr1g01673 400 SUPERFAMILY RNA-binding domain, RBD 52 173 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g01673 Accr-Chr1 46535734 46539834 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g01673 92 374 Eukaryotic Initiation Factors Gene Family AT2G23350 27.986 7.68e-27 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g01673 - - gmx:100814564 558.525