Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g01657 ATGCCGCGTCCTTGTTTTCACAAGCTAATGCTTCCATCCACCGTCCAAGCCGGCCAACTGAGGGTTCCAGATTATTTTTTGAGGAAGTTTGGGGGGGAGCTCTCTACAATTGCCACCCTCAGTGTTCCTGATGGCAGTGTCTGGCGTATTAGTATAAAAAGAGCAGACAACAAATTTTGGCTCCATGATGGTTGGAAGGAGTTCGTTCAACGTTACTCCATTGGTGTCGGATGCTTTTTGGTGTTCAGATATGAAGGGAATTCATCTTTCAATGTTCATATTTTCAATTTGGCTGCTTCTGAGATAAACTATCAATTAGCCAATCGAAATAGTGATGAACGGCCTTACTTTTCCAGCCAACATATTTTTGATGAAATGGAAGATGAAGATTCCATTGAGTTCTTTGATTCAACACCTTCACATCTAACCGCTGGGGCATTTAATAACAAGGTTATTGCTGGATCTGCAGATCAATTGACACCTGGCAAGAATTATACTCCTTCACCATTGCAGAATTTGTTTAATGGGTCTAAACTTAATAGCATAAACTGGGGAGATACTATTTCTTCAAAGGGTGCCAATTCACAAAACAATCAATTGACCAGAGATAAAGGTGTCCAGTTCAATGCAGCCGAGTTTAAAAGATCTACTGAAGAGTTGAAATTGCGCGCCTCCAATAATGAAATGCAGAGAGTTAAAAAAACTGTAAGAAAGAGGCGGAAATCTGATCCTGATGGTGAACAATCCTCTCCTCATCACGAAGAGGAAGTAGAAATGCGTTTTAGGTTTTATGAAAGTGCTTCTGCAAGAAAAAGAACTGTGACAGCAGAAGAAAGAGAAAGGGCAGTTAATGCTGCAAAAGCATATGAACCGCCTAATCCCTTCTGCAGGGTTGTCCTGCGGCCCTCCTATCTGTATAGGGGATGCATAATGTATTTGCCATCTGGCTTTGCAGAAAAGCATCTGAATGGGGTTTCAGGTTTCATCAAACTCCAGATTACTGAGGGAAGACAGTGGCCAGTTCGCTGCCTTTATAGAGTGGGAAGAGCGAAGTTAAGCCAGGGCTGGTTCGAATTCGCCCAAGATAACAACCTCAGGGAAGGTGATGTCTGTGTTTTTGAGCTGCTTAGAATGAGGGAAGTAGTGCTAAAAGTTACTATGTTCCGAGTCCTCGAAGAAGAAGAGGTGGGATTGTTGAACCCTCCCATGCACCAAAGCCAAAGCATGAGCCCAACCGCCAAGCTGTTGAACAATCCCTTGCAGCGAGACGTGAGCCCCATGAAAATGATTAGAAATTAG 1299 0.4311 MPRPCFHKLMLPSTVQAGQLRVPDYFLRKFGGELSTIATLSVPDGSVWRISIKRADNKFWLHDGWKEFVQRYSIGVGCFLVFRYEGNSSFNVHIFNLAASEINYQLANRNSDERPYFSSQHIFDEMEDEDSIEFFDSTPSHLTAGAFNNKVIAGSADQLTPGKNYTPSPLQNLFNGSKLNSINWGDTISSKGANSQNNQLTRDKGVQFNAAEFKRSTEELKLRASNNEMQRVKKTVRKRRKSDPDGEQSSPHHEEEVEMRFRFYESASARKRTVTAEERERAVNAAKAYEPPNPFCRVVLRPSYLYRGCIMYLPSGFAEKHLNGVSGFIKLQITEGRQWPVRCLYRVGRAKLSQGWFEFAQDNNLREGDVCVFELLRMREVVLKVTMFRVLEEEEVGLLNPPMHQSQSMSPTAKLLNNPLQRDVSPMKMIRN 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g01657 432 SUPERFAMILY DNA-binding pseudobarrel domain 3 96 IPR015300 -
Accr1g01657 432 CDD B3_DNA 294 389 IPR003340 GO:0003677
Accr1g01657 432 Pfam B3 DNA binding domain 6 96 IPR003340 GO:0003677
Accr1g01657 432 Pfam B3 DNA binding domain 299 389 IPR003340 GO:0003677
Accr1g01657 432 Gene3D - 1 98 IPR015300 -
Accr1g01657 432 CDD B3_DNA 4 96 IPR003340 GO:0003677
Accr1g01657 432 ProSiteProfiles B3 DNA-binding domain profile. 296 391 IPR003340 GO:0003677
Accr1g01657 432 MobiDBLite consensus disorder prediction 239 257 - -
Accr1g01657 432 ProSiteProfiles B3 DNA-binding domain profile. 5 98 IPR003340 GO:0003677
Accr1g01657 432 MobiDBLite consensus disorder prediction 222 257 - -
Accr1g01657 432 SUPERFAMILY DNA-binding pseudobarrel domain 289 389 IPR015300 -
Accr1g01657 432 PANTHER B3 DOMAIN-CONTAINING 3 379 - -
Accr1g01657 432 Gene3D - 273 393 IPR015300 -
Accr1g01657 432 SMART B3_2 6 98 IPR003340 GO:0003677
Accr1g01657 432 SMART B3_2 296 391 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g01657 Accr-Chr1 46206888 46212091 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g01657 1 390 B3 DNA Binding Superfamily AT3G18990 50.255 1.58e-129 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Accr1g01657 B3 3.8e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g01657 - - gmx:100813285 610.912