Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g01656 ATGGACGAGAGAGCAAATCGCCGGCGGCGATCAAGCTTGCCGGAGGGGAAACCGGCGCACTTTTTCAAGATAATGCTTCCTACTACGATTCTTGACAAAAAATTGAGAGTTCCTAAGACGTTTGTGAATCATCACGGGGATGATTTCTCTCCCATTATTACTTTACACGATCCTAATGCTCGAGAATGGAAAATTGGTTTGGAGAAGATTGAAGAAGATGATGACCTTTGTTTCTCAGAAGGTTGGGAAAACTTCATGGAATACTATTCCATCACTGAAGTACACTTTCTGGTTTTCAGATATGAAGGAGATTCAAAATTCCAGGTTCTAATATTTGACATGACTGGATCAGAAATTCAATACCCTTCCCAGAATTTAAGCCCAGAGAGAAACCTGGTTGCCTCATCGGGATCACTAAAGAGAAACGTTTATGTTCATCATCAGAGTCAAAATCATAAAGATGATAATGACGGTGGTGGTGGTGGTGGTGAAGGCGGCGGCGGCCATCATTTGAGCCAAAATTATAATGATAATAGTAGTGATGGTGATGGTGATGATGAAGGTGGCGGCGACGGCGGCTATCATCATCAGAGTCAGAATCATAACGACAGTGGTGGGAGAAACCAGGTTGCCTCATCAGGATCATCAAAGGGCAACAACCATGTTCATCATCAGAGTGAAAACCATGATGATAATAATGGTGGTGGCGGCCGCGATCATCAAAATCGTAATGATAATGGTGGTGGTGTTGACAGCGACGAGGACGAAGGTGGTGGGAGAAACCAGGTTGCCTCATCAGAATCATCAAAGAGCAATGGTCATGATCATTATTGGAGTCAAAATTTTAATGATAATGATGTTGGTGATGGTGGTGAGGGCGGCGGCAGCCATTGCCGTGGCCGGGGTGGCGACAGCTATCACTTTACTGAAGAATATTTTCCTGATGATGAGGATGATTCTACTCATGATGCACATGAAGAAGATAATTTCTATTATAGCATTTCTTTATCGAAATCCACCTCTACTTCTCCATCTAAATCCACTTCACCAGCAACAACAAAAAGACGAGGCTTCACCAAATTCATAGATCAACCATCAAGAAGAGAAAGAAGAAAACAGCATTCTCCTCCTCCTTCCTCAAAAAGAAAGAGGCATGAACATAGTAGTGACAGTGAAAGTGATGAAGTTTCAAATAGCATCAAAAGAAGAAAAAGAAGAAGAAGATCGATAGAAGAAAGACGCAGAGGAAGAGAAAAGAAATCAAACCACCAAGTGGAATGGCTTCGCAAACAAACATTGATATCAAAATCATACAAAAAGAGACACATATCAGAAAGAGCAAGAACCAAGGTTATTGAAGCTGCAGACAGCCACAAACCAGAGTTTCCTTCTTTCAGGGTAGTCTTGAGGCCTCACAACGTATACAACAGTATAGTGTATGTGCCAGCAAGTTTTGCAGTGAAGTATTTGGGAAAAGGGTCAGGGAAGATAAGATTGGAGAACGTGAAGGGAAAACAATGGGAGGCTAGATGCTTACACAAGAATGGATCAGGCAACGGAATGAGCATAGGAGAAGGGTGGGGTAAGTTTAAGATGGACAATGAGGTTAAGGAAGGAGATGTGTGTGTGTTTGAACTTGTGAACAGAAAAGACATTGTGTTGAGAGTTCAGATATTTCGTGTGAGACAATATTCAAATCGCTGA 1704 0.4208 MDERANRRRRSSLPEGKPAHFFKIMLPTTILDKKLRVPKTFVNHHGDDFSPIITLHDPNAREWKIGLEKIEEDDDLCFSEGWENFMEYYSITEVHFLVFRYEGDSKFQVLIFDMTGSEIQYPSQNLSPERNLVASSGSLKRNVYVHHQSQNHKDDNDGGGGGGEGGGGHHLSQNYNDNSSDGDGDDEGGGDGGYHHQSQNHNDSGGRNQVASSGSSKGNNHVHHQSENHDDNNGGGGRDHQNRNDNGGGVDSDEDEGGGRNQVASSESSKSNGHDHYWSQNFNDNDVGDGGEGGGSHCRGRGGDSYHFTEEYFPDDEDDSTHDAHEEDNFYYSISLSKSTSTSPSKSTSPATTKRRGFTKFIDQPSRRERRKQHSPPPSSKRKRHEHSSDSESDEVSNSIKRRKRRRRSIEERRRGREKKSNHQVEWLRKQTLISKSYKKRHISERARTKVIEAADSHKPEFPSFRVVLRPHNVYNSIVYVPASFAVKYLGKGSGKIRLENVKGKQWEARCLHKNGSGNGMSIGEGWGKFKMDNEVKEGDVCVFELVNRKDIVLRVQIFRVRQYSNR 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g01656 567 MobiDBLite consensus disorder prediction 148 323 - -
Accr1g01656 567 SUPERFAMILY DNA-binding pseudobarrel domain 458 560 IPR015300 -
Accr1g01656 567 PANTHER B3 DOMAIN-CONTAINING 14 557 - -
Accr1g01656 567 SMART B3_2 465 562 IPR003340 GO:0003677
Accr1g01656 567 SMART B3_2 21 115 IPR003340 GO:0003677
Accr1g01656 567 MobiDBLite consensus disorder prediction 382 400 - -
Accr1g01656 567 CDD B3_DNA 20 113 IPR003340 GO:0003677
Accr1g01656 567 Pfam B3 DNA binding domain 467 561 IPR003340 GO:0003677
Accr1g01656 567 Pfam B3 DNA binding domain 21 113 IPR003340 GO:0003677
Accr1g01656 567 Gene3D - 13 116 IPR015300 -
Accr1g01656 567 MobiDBLite consensus disorder prediction 335 355 - -
Accr1g01656 567 MobiDBLite consensus disorder prediction 335 424 - -
Accr1g01656 567 ProSiteProfiles B3 DNA-binding domain profile. 464 562 IPR003340 GO:0003677
Accr1g01656 567 CDD B3_DNA 463 560 IPR003340 GO:0003677
Accr1g01656 567 SUPERFAMILY DNA-binding pseudobarrel domain 16 114 IPR015300 -
Accr1g01656 567 MobiDBLite consensus disorder prediction 261 286 - -
Accr1g01656 567 Gene3D - 443 565 IPR015300 -
Accr1g01656 567 MobiDBLite consensus disorder prediction 222 260 - -
Accr1g01656 567 MobiDBLite consensus disorder prediction 195 221 - -
Accr1g01656 567 ProSiteProfiles B3 DNA-binding domain profile. 20 115 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g01656 Accr-Chr1 46200465 46202909 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g01656 435 564 REM Transcription Factor Family AT1G49480 44.275 2.87e-30 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Accr1g01656 B3 4.6e-19 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g01656 - - pcin:129292744 321.627