Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g01641 ATGATGATGATGATTCCACCGTCGTGGTCGTCGTCTTCTTCTTCAGCTCCTTCTCAGCCACCCCATCATCTTCGCTTCCACCATTTGGCCCCATCTCCCTCTCCGGCACCGGCCCCGACTCTACTTCCGGTACCTGTCAGCGAAGAATCACCGCTGCCCTCAAAGCTGTCGGTTGACTTCAGTCCACCCCTCATCGCAATGGTGGTGGTTGTTGCCGCCGCCTTCCTCGTCGTCACCTATTCCCGCCTCATCTCCCGCCGCCTCATACCTCCAATAATCCGCCTCACTCGACGGTGGCGCCGCCGTAGGCGACGTTCCTACCTCCCGTCCTCCTCCGGCGACCTCGACTCACTTCCTTATGATTCTCCTTTTGAGCCAACTGATGGCCCTTACATGTTTTCCCCTTATGGCCTCGACGAGTCCATCATCAAGACCATACCTTTTTCCCTCTACACCGCCAAATCCAAGGATCAATTCGAAGAGTCTCGACGCGATTGCGCGGTTTGTTTGTTGGAGTTCGAAGATGATGAGTACGTCCGAACACTGCCGTTTTGTTCTCACACTTTTCATGTCGATTGTATCGACGTTTGGCTCAGGTCGCACGCCAATTGCCCACTCTGCCGTGCCGGAGTTCTGTGCACGGAGTCCCCGTTCACGCCAATGATGGCAGCGAGGATTCGGCCGAGCCTTGACGACGACACGATTTTGCATAGACTAAGTATGGACCCTCTGGTCGAAGCTCCACCGCCGGGGGCTCATTCTCTGGTGTCGGAGATCACTCCGTGCAACGAAGAGCAATCGCCGAGAACGAACCACGCGAATCCGGAGGAAGATCGATTCAACGGCGGTCGTGATTTCCTCCTCAAGCGGTCCTACTCGTTTGGATTCGAACGTAGCTTGGCATCGGATAGAATGGTGATGGAGCCGGCGACGGCGTCGCCGTGGCGGGACCACCGAAGGGGAAGCAGCAGCAGCTTCTGGAGCAAAAGGCCATCACCGTTTGGATCGTTGGGAAAGTCGAGAGTGTTCTCGTTCAGATACTACAGAGGGATGAAATCGCCGTTCTTCCGGAGACGGGGGTTCTTCCCTCTGTCGGAGTCAAGCATGAGGTCATATAACGGAGGAGGAGGAGGAGGAAGCTCGTCTCGGAGAAGCAAGTCAATAGCAAGCCCGATGTTCATGAGGTCGTCGGCGGCGATGGCGGCGGTGGGAGCAGCAGCTTTCTCGTCGAGCCGGCTGAGGTGCGGCGACCCGGAGGCATTGCTGTCACCGGAGAGATACAGTAGGAGATAA 1293 0.5677 MMMMIPPSWSSSSSSAPSQPPHHLRFHHLAPSPSPAPAPTLLPVPVSEESPLPSKLSVDFSPPLIAMVVVVAAAFLVVTYSRLISRRLIPPIIRLTRRWRRRRRRSYLPSSSGDLDSLPYDSPFEPTDGPYMFSPYGLDESIIKTIPFSLYTAKSKDQFEESRRDCAVCLLEFEDDEYVRTLPFCSHTFHVDCIDVWLRSHANCPLCRAGVLCTESPFTPMMAARIRPSLDDDTILHRLSMDPLVEAPPPGAHSLVSEITPCNEEQSPRTNHANPEEDRFNGGRDFLLKRSYSFGFERSLASDRMVMEPATASPWRDHRRGSSSSFWSKRPSPFGSLGKSRVFSFRYYRGMKSPFFRRRGFFPLSESSMRSYNGGGGGGSSSRRSKSIASPMFMRSSAAMAAVGAAAFSSSRLRCGDPEALLSPERYSRR 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g01641 430 MobiDBLite consensus disorder prediction 1 20 - -
Accr1g01641 430 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 132 212 IPR013083 -
Accr1g01641 430 SMART ring_2 166 207 IPR001841 -
Accr1g01641 430 PANTHER RING-H2 FINGER PROTEIN ATL16 46 234 IPR044600 GO:0016567|GO:0016740
Accr1g01641 430 CDD RING-H2_EL5-like 165 208 - -
Accr1g01641 430 ProSiteProfiles Zinc finger RING-type profile. 166 208 IPR001841 -
Accr1g01641 430 FunFam RING-H2 finger protein ATL65 131 212 - -
Accr1g01641 430 SUPERFAMILY RING/U-box 153 213 - -
Accr1g01641 430 Pfam Ring finger domain 165 208 IPR001841 -
Accr1g01641 430 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g01641 Accr-Chr1 45993250 45994542 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g01641 58 430 C3H Transcription Factor Family AT3G18930 51.861 7.43e-95 289
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g01641 - K19041 gmx:100806115 506.523