Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g01640 ATGATCATTCTCATGATGATGATGATTCCACCGTCGTGGTCGTCGTCTTCTTCTTCAGCTCCTTCTCAGCCACCCCATCATCTTCGCTTCCACCATTTGGCCCCATCTCCCTCTCCGGCACCGGCCCCGACTCTACTTCCGGTACCTGTCAGCGAAGAATCACCGCTGCCCTCAAAGCTGTCGGTTGACTTCAGTCCACCCCTCATCGCAATGGTGGTGGTTGTTGCCGCCGCCTTCCTCGTCGTCACCTATTCCCGCCTCATCTCCCGCCGCCTCATACCTCCAATAATCCGCCTCACTCGACGGTGGCGCCGCCGTAGGCGACGTTCCTACCTCCCGTCCTCCTCCGGCGACCTCGACTCACTTCCTTATGATTCTCCTTTTGAGCCAACTGATGGCCCTTACATGTTTTCCCCTTATGGCCTCGACGAGTCCATCATCAAGACCATACCTTTTTCCCTCTACACCGCCAAATCCAAGGATCAATTCGAAGAGTCTCGACGCGATTGCGCGGTTTGTTTGTTGGAGTTCGAAGATGATGAGTACGTCCGAACACTGCCGTTTTGTTCTCACACTTTTCATGTCGATTGTATCGACGTTTGGCTCAGGTCGCACGCCAATTGCCCACTCTGCCGTGCCGGAGTTCTGTGCACGGAGTCCCCGTTCACGCCAATGATGGCAGCGAGGATTCGGCCGAGCCTTGACGACGACACGATTTTGCATAGACTAAGTATGGACCCTCTGGTCGAAGCTCCACCGCCGGGGGCTCATTCTCTGGTGTCGGAGATCACTCCGTGCAACGAAGAGCAATCGCCGAGAACGAACCACGCGAATCCGGAGGAAGATCGATTCAACGGCGGTCGTGATTTCCTCCTCAAGCGGTCCTACTCGTTTGGATTCGAACGTAGCTTGGCATCGGATAGAATGGTGATGGAGCCGGCGACGGCGTCGCCGTGGCGGGACCACCGAAGGGGAAGCAGCAGCAGCTTCTGGAGCAAAAGGCCATCACCGTTTGGATCGTTGGGAAAGTCGAGAGTGTTCTCGTTCAGATACTACAGAGGGATGAAATCGCCGTTCTTCCGGAGACGGGGGTTCTTCCCTCTGTCGGAGTCAAGCATGAGGTCATATAACGGAGGAGGAGGAGGAGGAAGCTCGTCTCGGAGAAGCAAGTCAATAGCAAGCCCGATGTTCATGAGGTCGTCGGCGGCGATGGCGGCGGTGGGAGCAGCAGCTTTCTCGTCGAGCCGGCTGAGGTGCGGCGACCCGGAGGCATTGCTGTCACCGGAGAGATACAGTAGGAGATAA 1305 0.5655 MIILMMMMIPPSWSSSSSSAPSQPPHHLRFHHLAPSPSPAPAPTLLPVPVSEESPLPSKLSVDFSPPLIAMVVVVAAAFLVVTYSRLISRRLIPPIIRLTRRWRRRRRRSYLPSSSGDLDSLPYDSPFEPTDGPYMFSPYGLDESIIKTIPFSLYTAKSKDQFEESRRDCAVCLLEFEDDEYVRTLPFCSHTFHVDCIDVWLRSHANCPLCRAGVLCTESPFTPMMAARIRPSLDDDTILHRLSMDPLVEAPPPGAHSLVSEITPCNEEQSPRTNHANPEEDRFNGGRDFLLKRSYSFGFERSLASDRMVMEPATASPWRDHRRGSSSSFWSKRPSPFGSLGKSRVFSFRYYRGMKSPFFRRRGFFPLSESSMRSYNGGGGGGSSSRRSKSIASPMFMRSSAAMAAVGAAAFSSSRLRCGDPEALLSPERYSRR 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g01640 434 MobiDBLite consensus disorder prediction 13 33 - -
Accr1g01640 434 SMART ring_2 170 211 IPR001841 -
Accr1g01640 434 SUPERFAMILY RING/U-box 157 217 - -
Accr1g01640 434 CDD RING-H2_EL5-like 169 212 - -
Accr1g01640 434 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 136 216 IPR013083 -
Accr1g01640 434 PANTHER RING-H2 FINGER PROTEIN ATL16 50 238 IPR044600 GO:0016567|GO:0016740
Accr1g01640 434 Pfam Ring finger domain 169 212 IPR001841 -
Accr1g01640 434 FunFam RING-H2 finger protein ATL65 135 216 - -
Accr1g01640 434 ProSiteProfiles Zinc finger RING-type profile. 170 212 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g01640 Accr-Chr1 45993238 45994542 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g01640 62 434 C3H Transcription Factor Family AT3G18930 51.861 6.81e-95 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g01640 - K19041 gmx:100806115 506.523