Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g01604 ATGATGGGGACCCCACATAGATCTACATCAACAGGGTCTTCAGACTCACATGAACAGAAGGACAGAGATATAGCTGATTCAAATTCGAACGCTGCGCTGCCTCCATGTCCTTTAAACCAGCAACTGTCTAGTTCCTTGGATGGCCCAGTGGCTATACTCTGGGATATTGAAAGTTGTCCTGTTCCAAGTGATGTGCGCCCTGAAGATGTTGCTGGGAATGTAACAATGGCTTTGCAGGTGCATCCAATAATTAAAGGAGCTGTTGTGATGTTTTCTGCTTATGGGGATTTCAATAATTTCCCCAGGCGACTCAGAGAAGGTTGCCAAAGAACTGGTGTTAAACTCACTGATGTTCCCAGTGGGAGAAAAAATGCTGCTGACAAAGCTATCTTGATTGACATGTTCTTGTTTGCCCTTGACAACCAGCCGCCTTCTTCTATAATGCTGATATCCGGAGATGTTGATTTTGCTCCTGCAGTTCATGTTCTTGGCCAACGGGGATATACTATCATTCTTGTCGTCCCTGCTCAGATGGGCATGTCAACTGCCCTTATCAATGCGGGTAAATTTGTCTGGGACTGGCCTAGCATTGCTCGTGGAGAAGGTTTTCTGCCTCCCTCAAAGGCTCTAGTGCCACCTCATGTTGTTCAAACTGAGGCTGTTGCAGATCTGATGGGGTGCCATATCAATGGCAACTTTGATGGAAAAAATGAAGAAGCTATTGTTTATGGAGGAGGGATCTCACAGAACTACCTTATATCTAAGTGTTGCCCATTTGTGTCACAATCTCTGCCTGAATACAAAAGTGATACATTGAATGCTTCATGCTTTCCAACGGCTTTGAGGTCACGTAGCCTTCCATCTCCTCTGAACAGTGTTTCAGGAGGATCTATGGCTTCTTCTAGTGACCAAAATGAATTCCCATCGTGGGTACAACCTGGAGATTTGGATGATGTGAAGTGTCAGCTGGTAAAGTTGCTAGAATATTCTGGAGGTTGTTTGCTTCTAGCTCAAGTTCTACCGGAGTATCAAAAATATTTTGGGAGGTCTCTCTCTCCATCTAAATATGGGGTACGCAAGTTAGTGAGCCTTTTCAAGAAAATGGGTGATCCATTTTATGTGGAAGGGAAAGGGCCTCGGGTATTTGTATATCTCCGAAACTGGAAAGTGTGCCCTTTGTCTCAGGTGAGCAACGATAAGAAAGGAAAAGTGATTCAGGAAGAGAATGCAGGAATTGTGCATGCTTGTTGCTCTGTAGATGAAGAAAGAATAGTCACAGAAGAACATGATATGAGAAGCAGCATAGAAAAGGTTCACCAAGGGAAAGCAGCCAGAAGTGAAATTCATGACCGAATTCTTGAGCAATTGAAGCATGAGCTGCAAGAGATTCTCGTAATTTATTCTTGTCCAATATTCATAGATTGTTTCGATGACATTTACCGTCTACGATACAAGAAGCCACTGGAATACCAGAGACTGGGCGTGGACAAGTTAGAGGACTTGTTTGAGAAAGTGAGTGATGTGGTAGCATTGTATGAAGAACCAGTAAGCAAGAGGAAGTTCCTGGCTGCTGTGCATGGTTAG 1584 0.4394 MMGTPHRSTSTGSSDSHEQKDRDIADSNSNAALPPCPLNQQLSSSLDGPVAILWDIESCPVPSDVRPEDVAGNVTMALQVHPIIKGAVVMFSAYGDFNNFPRRLREGCQRTGVKLTDVPSGRKNAADKAILIDMFLFALDNQPPSSIMLISGDVDFAPAVHVLGQRGYTIILVVPAQMGMSTALINAGKFVWDWPSIARGEGFLPPSKALVPPHVVQTEAVADLMGCHINGNFDGKNEEAIVYGGGISQNYLISKCCPFVSQSLPEYKSDTLNASCFPTALRSRSLPSPLNSVSGGSMASSSDQNEFPSWVQPGDLDDVKCQLVKLLEYSGGCLLLAQVLPEYQKYFGRSLSPSKYGVRKLVSLFKKMGDPFYVEGKGPRVFVYLRNWKVCPLSQVSNDKKGKVIQEENAGIVHACCSVDEERIVTEEHDMRSSIEKVHQGKAARSEIHDRILEQLKHELQEILVIYSCPIFIDCFDDIYRLRYKKPLEYQRLGVDKLEDLFEKVSDVVALYEEPVSKRKFLAAVHG 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g01604 527 CDD LOTUS 453 509 - -
Accr1g01604 527 Gene3D - 447 519 IPR041966 -
Accr1g01604 527 Gene3D - 314 384 IPR041966 -
Accr1g01604 527 ProSiteProfiles OST-type HTH domain profile. 452 526 IPR025605 -
Accr1g01604 527 CDD PIN_limkain_b1_N_like 49 175 - -
Accr1g01604 527 ProSiteProfiles OST-type HTH domain profile. 315 387 IPR025605 -
Accr1g01604 527 Pfam NYN domain 49 189 IPR021139 GO:0004540
Accr1g01604 527 CDD LOTUS 316 385 - -
Accr1g01604 527 Gene3D - 77 195 - -
Accr1g01604 527 PANTHER LIMKAIN B LKAP 14 402 IPR024768 GO:0005777|GO:0010468
Accr1g01604 527 MobiDBLite consensus disorder prediction 1 40 - -
Accr1g01604 527 Pfam OST-HTH/LOTUS domain 453 513 IPR025605 -
Accr1g01604 527 Pfam OST-HTH/LOTUS domain 316 380 IPR025605 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g01604 Accr-Chr1 45494006 45495589 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g01604 46 200 C2H2 Transcription Factor Family AT5G61190 39.355 5.05e-27 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g01604 - - gmx:100818186 694.886