Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g01596 ATGTCAGTGAATCTAGAACCGTTGGATTTAGGAGTTCCGATTCCATACCACTTCAGATGCCCCATTTCCCTTGATCTCATGCACGAACCCGTTACTATACCCACCGGTCAGACTTACGACCGAACCAGCATCCAGTCTTGGTTCGCCGCCGGTAACACCACCTGCCCCGTCACCAGAGCCCCTCTTTCCGACTTCACTCTCATCCCAAACCACACTCTCCGCCGCGTTATCCGAGACTGGTGCGTTTCCAATCGCGATTTTGGAGTCGAACAGATCCCAAGTCCGACCCGACCAGCCCACCCTTCGATGGTTAGGACGTTATTGAATCAAGCTTCGTCGGAGACGTGCATGTCTCAGTCTCGTCTCTCTGCACTGCGACGCCTCCGACGACTCGCTAGTGACTCGGAAAAGAATCGTTCTCTCATTGGATCTTACAACGTGCGCCGGATTTCACTCCATATCCTGTTTGATACCAATTCGGATTGTTTTGAGTTGAAGCAGGAGTCGCTCGCACTTCTGGTTTGTTTCTCACTTGTCGAATCTGAATGCGTCTCCATCGCATCGGAACCGGAGAGAATCAAGTATTTGTCGCGTTTGATGCTTCATTCCTCGATCGACGTTCGAGTTAACTCGGCTGCTCTGATTGAGTCAGTCGTGGGCGGGACTAGGTCGCCGGAGCTGCATGCACAAATCAGCAATGTCGATGAAATCTACGGTGGGGTGGTTGATATTTTAAAGAGTCCAGTTTTGTTCCCTCGCGCTCTCAAGATTGGGATCAAGGCCTTGTTTGCTTTGTGCCTGCCGAAACAAACACGGCACAAAGCGGTGGCTGCCGGTGCTCCGGCGATCCTCATGGACCGGCTCTCTGATTTCGAGAAATGCGATGCTGAGAGAGCTCTGGTGACGATTGAGTTGCTCTGCGGAATTCCGGAGGGGTTGGCCGCGTTTGCAGGGCACGCTCTGGCGGTACCGCAGCTGGTGAAAACAATACTGAAGATATCGGACAGGGCGACGGAGCACGCTGCCGCAGTGCTATTGGCTGTTTGCTCAGAATCGGAGGAGTGCCGGAGGGAAGCCGTGGCGGCGCGTGTGTTGACGCCACTGCTATTGGTGGCACAGAGTGATTGTACAGAAAGGGCAAAGAGGAAGGCGAAGATGTTGCTGAAGCTTCTTCGGGATTCGTGGCCTCAAGATTGCCTTCGAAACTCTGACGATTTTGCATGCAGCGAACTTCTTGTACCGTTTTGA 1248 0.5312 MSVNLEPLDLGVPIPYHFRCPISLDLMHEPVTIPTGQTYDRTSIQSWFAAGNTTCPVTRAPLSDFTLIPNHTLRRVIRDWCVSNRDFGVEQIPSPTRPAHPSMVRTLLNQASSETCMSQSRLSALRRLRRLASDSEKNRSLIGSYNVRRISLHILFDTNSDCFELKQESLALLVCFSLVESECVSIASEPERIKYLSRLMLHSSIDVRVNSAALIESVVGGTRSPELHAQISNVDEIYGGVVDILKSPVLFPRALKIGIKALFALCLPKQTRHKAVAAGAPAILMDRLSDFEKCDAERALVTIELLCGIPEGLAAFAGHALAVPQLVKTILKISDRATEHAAAVLLAVCSESEECRREAVAARVLTPLLLVAQSDCTERAKRKAKMLLKLLRDSWPQDCLRNSDDFACSELLVPF 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g01596 415 Gene3D - 95 401 IPR011989 -
Accr1g01596 415 ProSiteProfiles U-box domain profile. 13 87 IPR003613 GO:0004842|GO:0016567
Accr1g01596 415 SUPERFAMILY ARM repeat 103 392 IPR016024 -
Accr1g01596 415 SMART Ubox_2 17 80 IPR003613 GO:0004842|GO:0016567
Accr1g01596 415 Pfam U-box domain 14 85 IPR003613 GO:0004842|GO:0016567
Accr1g01596 415 CDD RING-Ubox_PUB 15 67 IPR045210 -
Accr1g01596 415 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 87 IPR013083 -
Accr1g01596 415 PANTHER WDSAM1 PROTEIN 14 401 IPR045185 GO:0061630
Accr1g01596 415 FunFam RING-type E3 ubiquitin transferase 14 85 - -
Accr1g01596 415 SUPERFAMILY RING/U-box 12 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g01596 Accr-Chr1 45412741 45413988 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g01596 1 415 U-box Gene Family AT1G49780 63.033 1.07e-177 500
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g01596 - - pcin:129284989 584.334