Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g01595 ATGTCAGTGAATCTAGAACCGTTGGATTTAGGAGTTCCGATTCCATACCACTTCAGATGCCCCATTTCCCTCGATCTCATGCGCGAACCCGTTACTATAACCACCGGTCAGACTTACGACCGAACCAGCATCCAGTCTTGGTTCGCCGCCGGTAACACCACCTGCCCCGTCACCAGAGCCCCTCTTTACGACTTCACTCTCATACCAAACCACACTCTCCGCCGCCTTATCCAAGACTGGTGCGTTTCCAATGGCGATTTCGGAGTCGAACAGATCCAAAGTCCGGCCCGACCTGCCAACCCTTCTCTGGTTCGGACGTTATTGAATCAAGCTTCGTCGGAGACGTGCACTACTCAGTCACGTATCTCTGCACTGCGAAGCCTCCGACGACTCGCTAGTGAATCGGAAAGGAATCGTTCTCTGATTGGATCTTACAACGTGCGCCGGATTTTACTGCATATCCTGTTTGATACCGATTCGGATTGTTTTGAATTGAAGCACGAGTCGCTCGCACTTTTGGTCTGTTTCTCACTTGCCGATTCTGAATGCGTCTCCATCGCATCGGAACCGGAGAGAATCAAGTATTTGTCGCGTTTGATGTTTCATTCCTCGATCGATGTCCGAGTTGACTCGGCTGCCCTGATTGAGTCAGTGGTGAGCGGGACTCGGTCGCTGGAGCTGCAAGCTCAAATCAGCAGTGTCGATGATATCTACGGTGGAGTGGTTGATATCTTGAAGAGTCCAGTTTCGTTCCCTCGCGCTCTCAAGGTTGGGATCAAGGCCTTGTTTGCTTTGTGCCTGCCGAAACAAACACGGCATAAAGCGGTGGCTGCCGGTGCTCCTGCGATCCTCCTGGACCGGCTCAATGATTTCGAGAAATGCGATGCTGAGAGAGCTCTGGTGACGATTGAGTTGCTCTGTCGAATTCCCGAGGGTTTGGCCGCGCTTGCGGGGCACGCTCTGACGGTACCGCAGCTGGTGAAAACAATACTGAAGATATCGGACCGGGCGACGGCGAACGCTGCCGCAGCGCTATTGGCTGTTTGCTCAGAATCGGAGGAGTGCCGGAGGAAGGCGGTGGCCGCGCGTGTGTTGACACCACTGCTATTGGTGGTACAGAGTGATTGTACAGAGAGGGCAAAGAGGAAGGCGAAGATGTTGCTGAAGCTTCTTCGGGAGTCGTGGCCTCAAGATTGCGTTGGAAACTCTGACGATTTTGCATGCAGCGAACTTCTTGTACCGTTTTGA 1248 0.5312 MSVNLEPLDLGVPIPYHFRCPISLDLMREPVTITTGQTYDRTSIQSWFAAGNTTCPVTRAPLYDFTLIPNHTLRRLIQDWCVSNGDFGVEQIQSPARPANPSLVRTLLNQASSETCTTQSRISALRSLRRLASESERNRSLIGSYNVRRILLHILFDTDSDCFELKHESLALLVCFSLADSECVSIASEPERIKYLSRLMFHSSIDVRVDSAALIESVVSGTRSLELQAQISSVDDIYGGVVDILKSPVSFPRALKVGIKALFALCLPKQTRHKAVAAGAPAILLDRLNDFEKCDAERALVTIELLCRIPEGLAALAGHALTVPQLVKTILKISDRATANAAAALLAVCSESEECRRKAVAARVLTPLLLVVQSDCTERAKRKAKMLLKLLRESWPQDCVGNSDDFACSELLVPF 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g01595 415 SUPERFAMILY RING/U-box 12 85 - -
Accr1g01595 415 SUPERFAMILY ARM repeat 103 396 IPR016024 -
Accr1g01595 415 ProSiteProfiles U-box domain profile. 13 87 IPR003613 GO:0004842|GO:0016567
Accr1g01595 415 Gene3D - 88 231 IPR011989 -
Accr1g01595 415 FunFam RING-type E3 ubiquitin transferase 14 86 - -
Accr1g01595 415 PANTHER WDSAM1 PROTEIN 14 400 IPR045185 GO:0061630
Accr1g01595 415 SMART Ubox_2 17 80 IPR003613 GO:0004842|GO:0016567
Accr1g01595 415 CDD RING-Ubox_PUB 15 67 IPR045210 -
Accr1g01595 415 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 86 IPR013083 -
Accr1g01595 415 Gene3D - 239 392 IPR011989 -
Accr1g01595 415 Pfam U-box domain 14 84 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g01595 Accr-Chr1 45394712 45395959 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g01595 1 415 U-box Gene Family AT1G49780 62.322 2.43e-176 497
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g01595 - - var:108341190 567.385