Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g01592 ATGTCAGTGAATCTAGAACCGTTGGATTTAGGAGTTCCGATTCCATACCACTTCAGATGCCCCATTTCCTTCGATCTCATGCACGAACCCGTTACTATACCCACGGGTCAGACTTACGACCGAACCAGCATCCAGTCTTGGTTCGCTGCCGGTAACACCACCTGCCCCATCACCAGAGCCCCTCTTCCCGACTTCACTCTCATCCCAAACCACACTCTCCGCCGCCTTATCCGAGACTGGTGCGTTTCCAATCGTGCTTTCGGAGTCGAACAGATCCCAAGTCCGACCCGACCAGTCCACCCTTCTCTGGCTCGGACGTTATTGGATCAAGCTTCGTCGGAGACGTGCACTTCTCAGTCATGTCTCTCTGCACTGCGACGCCTCCGACGACTCGCTAGTGACTCGAAAAACAATCATTCTCTCATTGGATCTTACAACGTGCGCCGGATTTTACTCCATATCCTGTTTGATACCAATTCGGATTGTTTTGAGTTGAAGCACGATTCGCTCGCACTTTTGGTTTGTTTCTCACTTGTCGAACCTGAATGCGTCTCCATCGCATCGGAACCGGAGAGAATCAAGTATTTGTCGCATTTGATGTTTCATTCCTTGATTGAAGTCCGACTTAACTCGGCTGCTCTGATTGAGTCAGTCGTGAGCGGGACTCGGTCGCCGGAGCTGCATGCACAAATCAGCAATGTCGATGAAATCTACGGTGGAGTGGTTGATATGTTGAAGAGTCCAGTTTTGTTCCCTCGCGCTCTCAAGATTGGGATCAAGGCCTTGTTTGCTTTGTGA 798 0.505 MSVNLEPLDLGVPIPYHFRCPISFDLMHEPVTIPTGQTYDRTSIQSWFAAGNTTCPITRAPLPDFTLIPNHTLRRLIRDWCVSNRAFGVEQIPSPTRPVHPSLARTLLDQASSETCTSQSCLSALRRLRRLASDSKNNHSLIGSYNVRRILLHILFDTNSDCFELKHDSLALLVCFSLVEPECVSIASEPERIKYLSHLMFHSLIEVRLNSAALIESVVSGTRSPELHAQISNVDEIYGGVVDMLKSPVLFPRALKIGIKALFAL 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g01592 265 FunFam RING-type E3 ubiquitin transferase 14 86 - -
Accr1g01592 265 Gene3D - 102 263 IPR011989 -
Accr1g01592 265 Pfam U-box domain 14 85 IPR003613 GO:0004842|GO:0016567
Accr1g01592 265 SUPERFAMILY RING/U-box 12 89 - -
Accr1g01592 265 SMART Ubox_2 17 80 IPR003613 GO:0004842|GO:0016567
Accr1g01592 265 PANTHER WDSAM1 PROTEIN 14 264 IPR045185 GO:0061630
Accr1g01592 265 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 87 IPR013083 -
Accr1g01592 265 CDD RING-Ubox_PUB 15 67 IPR045210 -
Accr1g01592 265 SUPERFAMILY ARM repeat 105 250 IPR016024 -
Accr1g01592 265 ProSiteProfiles U-box domain profile. 13 87 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g01592 Accr-Chr1 45307647 45308444 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g01592 1 265 U-box Gene Family AT1G49780 58.672 7.29e-103 304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g01592 - - pcin:129284989 356.681