Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g01590 ATGGTTTGTGGTTCTTGTCGTCGACTTCTATCCTATCAACGAGGTGCCAAACATGTCAAGTGTTCTTGCTGTCAGACGGTAAACCTTGTGTTAGAAGCTGATCAGGTTGGGCAAGTCAAGTGTGGGAGCTGTGCAGTTCTGCTAATGTACCCATATGGCGCTTCACAAGTTAAGTGTAGCTCCTGCCAGTTTGTGACAAAAATTGAGGAACACAACAAGCGGCCCCCATGGTCTGTACAGCAACAGCAAGGGAAACCTACTCCTCCCAAATCAATTTCTAAGCAATCTACTTAA 294 0.4592 MVCGSCRRLLSYQRGAKHVKCSCCQTVNLVLEADQVGQVKCGSCAVLLMYPYGASQVKCSSCQFVTKIEEHNKRPPWSVQQQQGKPTPPKSISKQST 97
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g01590 97 Pfam LSD1 zinc finger 3 27 IPR005735 -
Accr1g01590 97 Pfam LSD1 zinc finger 41 65 IPR005735 -
Accr1g01590 97 PANTHER PROTEIN LSD1 1 86 IPR040319 -
Accr1g01590 97 MobiDBLite consensus disorder prediction 72 97 - -
Accr1g01590 97 NCBIfam zinc finger domain, LSD1 subclass 38 67 IPR005735 -
Accr1g01590 97 NCBIfam zinc finger domain, LSD1 subclass 1 30 IPR005735 -
Accr1g01590 97 MobiDBLite consensus disorder prediction 75 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g01590 Accr-Chr1 45267671 45269088 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Accr1g01590 zf-LSD1 4.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g01590 - - pcin:129292659 185.652