Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g01589 ATGGCTCAAATGGTTTGTGGTTCTTGTCGTCGACTTCTATCCTATCAACGAGGTGCCAAACATGTCAAGTGTTCTTGCTGTCAGACGGTAAACCTTGTGTTAGAAGCTGATCAGGTTGGGCAAGTCAAGTGTGGGAGCTGTGCAGTTCTGCTAATGTACCCATATGGCGCTTCACAAGTTAAGTGTAGCTCCTGCCAGTTTGTGACAAAAATTGAGGAACACAACAAGCGGCCCCCATGGTCTGTACAGCAACAGCAAGGGAAACCTACTCCTCCCAAATCAATTTCTAAGCAATCTACTTAA 303 0.4587 MAQMVCGSCRRLLSYQRGAKHVKCSCCQTVNLVLEADQVGQVKCGSCAVLLMYPYGASQVKCSSCQFVTKIEEHNKRPPWSVQQQQGKPTPPKSISKQST 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g01589 100 NCBIfam zinc finger domain, LSD1 subclass 41 70 IPR005735 -
Accr1g01589 100 NCBIfam zinc finger domain, LSD1 subclass 3 33 IPR005735 -
Accr1g01589 100 Pfam LSD1 zinc finger 44 68 IPR005735 -
Accr1g01589 100 Pfam LSD1 zinc finger 6 30 IPR005735 -
Accr1g01589 100 PANTHER PROTEIN LSD1 1 89 IPR040319 -
Accr1g01589 100 MobiDBLite consensus disorder prediction 75 100 - -
Accr1g01589 100 MobiDBLite consensus disorder prediction 78 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g01589 Accr-Chr1 45267662 45269088 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Accr1g01589 zf-LSD1 4.4e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g01589 - - pcin:129292659 191.045