Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g01586 ATGCAAGGTAACAGAAGGACTCTTGGGTCCTTTCCAGCAATTGTTGGTATGATGCAGGAGCCTAGTTCCAGTGGCACTGATATAAATCAGCAGACTTCCTTGAATCACATGCAAAATCCAGTTGATGCTCGGTTGTCAGATTTTCTGGGATCCTCCAGTGACACTGCATGTTTACGCACTAGCAGTCCTAATGTTCAGAACTTCGATGGATGGAATGCTGGTGAACCTAGTTCTAGTGTGAATCTTCACAGTCAAGTCAACAGTGATGGGCTCAAAGCAGAACATGGTTGGTCTTCTTCATGTAGTGCTTCTACTGAGGATGTTCTCAGACCAGAAGTACAGCAATTTGATCCAAATAATCTAACTTTCCCTGGTAGCTTGAATACCGACTTATGTGGAAATCAATCCAGAGTTCGGCCTTTCTTCTTGCAAGGTTCCAGCTCCAATCATATAACCCAGAATGCGGCTTTGAATATGGGTTCCGTTGCCAGCCCTGTTAATCATGGGAAAGGAACAGAACCTTGTAGCAGTGATAGTATTCACAATACATATGGATTCAATAGTAAGCATACATCATTTGGTAGTGCTTCATGTGATCATATAGGAACTTCATCTGGAAGCTCTGGTTACATTGTTGGGGGAGATAATGAAAATTCAAGCTCTTCTTTCGTTAATTGGGGTTCTTCCTGCAAAAGAAAGGCTCTTGAAAGTACTTCTGGTCAGCTGTGTACTGGAGGAAGTTCAAGCTCTTTTTTGGAAGCTGAAAACGGTTGCTGGTCTACTGGGACTCCCAATTCTAGTATTGCTTCCAGCAGTTTACATGTGTCTAGACCTTCTGAGGATATTCCTAATACTAATCCTCCAGTAGAGCAGAACCCAAGAAATGAGATGAGGCAAATAACTTCAGACGCATTCCCTTTGATTGGAGGAGCTATGGGACATGTGAACAGGCCTCTGACTCTGAGAGACTTTGATAGGAGAATGAATTATCCACAACGACAGGAATCTAGGCATGCTAGTCATTCTTCCTCCCGCCAAACACCTACCTCTCACCCATTTAATGATTCTCTCGAATTAAGGTTAACAGCTGGAGTTACAGCAACTGACTCTAGTGCCCCTCTGTGTCAGTCACATGTTACGCACATTCCTGGTTTGCCAGGGAACATGCATCCTTTTCCTTGGAGTGGAGCTTCTAGCTCAAGAGGATCCAGTTCATCAACTTCTTATAACTCTGCAGAAAGAGAACTTCGGGAAGAATTGAACTTAAGGATTTTTCCAAGGGACAATACAGAGCACCCCATCCTTGCACCTTCATCATCTGGACTTGACCCTACAAGTTGGCATATGTCATCTGGCAATGTGCACAATCCTGGAATTGTACCTCCTGCACCTTGGATTGGATCCAATTCAAGTGCCAATTCATTACCCACTCCGAGATGGGTTGTTCCCCATGAAGTTCCAACGCAGAGCCAGCAAAGATTATCAGAATTCAGTCCCTGGCCCCTTTTCCCGTCAATGAACTCAGTATCTGGTGTTCATAATGTTCATTCTGCCTCATCTTCTACTTCTTCTGGTCCTCCTTCCTTTTCTCCAGACATGAGCAACCACCAATCATATCCAAGATTAGCGTCATTGATGGAGAGAAGAGGTGATGAAATTCTTAGTGCACCCCACTCATTGCGGGCTTTGGCTGTTGACATTGAAGGGAGACGCCGATTGATATCTGAGATTCGCCAAGTCTTAAGTGCAATGCGTAGGGGTGAGAACTTACGAGCTGAGGATTATATGCTCTTTGACCCTTTCATATATCATGGTATGGCTGAACTGCATGATAGGCACAGGGACATGCGCCTTGATGTTGATAACATGTCTTATGAGGAATTGCTGGCATTGGAGGAGCGCATTGGAGACGTGAGCACCGGATTGAGCGAGGATACCATTATGAAGTTGATGAAACATCGGATCTTCGTGTCTGTCATGACTGAGTCTTCTACAGATCTGGAACCTTGTTGTATCTGTCAGGAGCAATACGCCGATGGGGAGGATGTAGCCTCACTGGATTGTGGACATGAATTCCACATCAACTGCATCAAGCAGTGGCTAATGCAGAAGAACCTGTGCCCCATTTGCAAAACCACAGCCATTGCAACATGA 2154 0.4475 MQGNRRTLGSFPAIVGMMQEPSSSGTDINQQTSLNHMQNPVDARLSDFLGSSSDTACLRTSSPNVQNFDGWNAGEPSSSVNLHSQVNSDGLKAEHGWSSSCSASTEDVLRPEVQQFDPNNLTFPGSLNTDLCGNQSRVRPFFLQGSSSNHITQNAALNMGSVASPVNHGKGTEPCSSDSIHNTYGFNSKHTSFGSASCDHIGTSSGSSGYIVGGDNENSSSSFVNWGSSCKRKALESTSGQLCTGGSSSSFLEAENGCWSTGTPNSSIASSSLHVSRPSEDIPNTNPPVEQNPRNEMRQITSDAFPLIGGAMGHVNRPLTLRDFDRRMNYPQRQESRHASHSSSRQTPTSHPFNDSLELRLTAGVTATDSSAPLCQSHVTHIPGLPGNMHPFPWSGASSSRGSSSSTSYNSAERELREELNLRIFPRDNTEHPILAPSSSGLDPTSWHMSSGNVHNPGIVPPAPWIGSNSSANSLPTPRWVVPHEVPTQSQQRLSEFSPWPLFPSMNSVSGVHNVHSASSSTSSGPPSFSPDMSNHQSYPRLASLMERRGDEILSAPHSLRALAVDIEGRRRLISEIRQVLSAMRRGENLRAEDYMLFDPFIYHGMAELHDRHRDMRLDVDNMSYEELLALEERIGDVSTGLSEDTIMKLMKHRIFVSVMTESSTDLEPCCICQEQYADGEDVASLDCGHEFHINCIKQWLMQKNLCPICKTTAIAT 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g01586 717 SMART ring_2 670 710 IPR001841 -
Accr1g01586 717 MobiDBLite consensus disorder prediction 393 413 - -
Accr1g01586 717 FunFam E3 ubiquitin-protein ligase MBR2 637 715 - -
Accr1g01586 717 MobiDBLite consensus disorder prediction 341 355 - -
Accr1g01586 717 SUPERFAMILY RING/U-box 653 714 - -
Accr1g01586 717 MobiDBLite consensus disorder prediction 267 295 - -
Accr1g01586 717 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 632 715 IPR013083 -
Accr1g01586 717 Pfam Ring finger domain 670 711 IPR001841 -
Accr1g01586 717 MobiDBLite consensus disorder prediction 514 536 - -
Accr1g01586 717 MobiDBLite consensus disorder prediction 393 411 - -
Accr1g01586 717 ProSiteProfiles Zinc finger RING-type profile. 670 711 IPR001841 -
Accr1g01586 717 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 226 715 IPR045191 GO:0061630
Accr1g01586 717 MobiDBLite consensus disorder prediction 331 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g01586 Accr-Chr1 45247170 45251197 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g01586 18 717 C3H Transcription Factor Family AT2G15530 37.364 9.98e-116 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g01586 - K19041 gmx:100809024 893.264