Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g01578 ATGGAGATCGATCATGAACCGCCGCCTTCCAACGATGATAGCGCAAAAGCTGCCGAGAGCCCTGTAAACTCCTCGGTTCCTTCTTTTTCTTCTTCTTCTTGCTCATCTTCCTCGTCACCACGTGGTTTGAAGGAAAAGGAGAACGAAGCGAACGCGTCCACGTCAGCCAAGTACGACGATGAAGACGAGGAGGAAGAGGACGTCTGTCGGATATGCCGGAACCCTGGTGATGCTGAAAATCCTCTCAGATACCCGTGTGCGTGTAGCGGGAGCATCAAGTTTGTGCATCAAGAATGTCTCCTTCAGTGGCTTAATCATAGCAACGCTCGTCAATGCGAGGTTTGCAAACATGCCTTTTCATTCTCTCCTGTTTATGCTCCGAATGCCCCGGCTAGGCTACCTTTTCAAGAATTCATAGTTGGAATGGCTGTGAAAGCGTGCCATGTTCTGCAATTCTTTTTGCGCCTGAGTTTTGTGCTATCCGTGTGGCTCCTTATTATACCTTTCATCACATTTTGGATATGGCGATTAGCTTTTGTGAGGAGCTTTGGTGAAGCCCAGAGGTTATTCTTAAGTCATTTATCTACTGCGGTTATTCTGACTGATTGTCTGCATGGTTTCCTACTCTCTGCAAGCATTGTGTTCATTTTTCTTGGGGTCACTTCTTTGAGGGATTACTTTAGGCATTTACGAGAAATTGGGGGGCAGGATGTTGACAGAGAAGATGAAGTGGATAGAAATGGGGCTCGAATTGCCAGAAGGCCTGTTGGACAAGCTAATCGCAATGTTGTTGGTGATGGAAATGTTGAGGATGCTGGTGGAGTTCAAGGCATTGTTGTACCTGCTCAAGCTCCTAGAAGGAATGGAGAGAATGTTGCAGCACGGTGGGAGATGCAAGCACAGCGTCTTGAGGCTCATGTGGAGCAAATGTTTGATGGTTTGGATGATGCTGATGGTGCTGAGGATGTGCCCTTTGATGAACTTGTGGGCATGCAGGGTCCAGTTTTCCATCTGCTTGAAAATGCCTTTACTGTGCTGGCAAGCAATATGATTTTCCTTGGTGCTGTGATCTTTGTGCCCTTTTCATTGGGCCGAATTGTACTCCATTATCTATCTTGGTTCTTTTCAACTGCTAGTGGTCCTGTATTATCAACTGTCATACCACTTACAGATACAGCTCTTTCCCTAGCGAATATTACATTAAAAAATGCATTAACTGCAGTAAAAAATTTGTCATCTGAAGCTCAAGAAAGTGGACTGATAGGCCAGGTTGCAGAAATGTTGAAAGTCAATGCAAGTGGATTAAGTGAAATGTCTAAAAACATTAGTGACAATGTTTCAGCTGATTACTTGAAAGGAGGGTCATTTGGAACTTCAAGGCTTTCTGATGTTACCACTCTAGCTATTGGATATATGTTCATACTCACTCTACTCTTTTGCTACTTTGGCATTGTTGCTTTGATTCGATACACAAGGGGTGAGCCTTTAATAATTGGAAGGTTCTATGGTATTGTTTCTGTAGCAGAGACAATTCCATCTCTACTCAGGCAGTTTTTGGCAGCAATGAGGCATCTGATGACCATGGTTAAGGTTGCTTTCCTCTTAGTTATTGAATTGGGGGTATTTCCGTTGATGTGTGGATGGTGGCTGGATGTTTGTACCATCAGGATGTTTGGGAAGACAATGGCTCACAGAGTTCAGTTCTTTTCTGCTTCTCCTCTAGCAAGTTCATTGGTTCATTGGATTGTAGGGATTGCCTACATGCTACAAATCAGCATATTTGTCAGCCTTCTCAGAGGGGTTTTGCGCAATGGAGTTCTGTACTTCCTTCGAGATCCTGCCGATCCCAACTACAATCCTTTCCGTGATTTAATTGATGACCCTGTTCACAAACATGCTCGTAGGGTCCTGTTATCTGTTGCCGTTTACGGAAGTTTAATTGTGATGCTTGTATTTTTACCTGTTAAACTTGCCATGCGGATGGCTCCTTCCATTTTCCCACTTGACATATCGGTATCTGATCCATTCACTGAAATTCCAGCAGACATGCTCCTCTTTCAGATTTGCTTCCCATTTGCTATTGAGCATTTTAAACTGAGGACAACTATTAAGTCTCTTCTGCGCTACTGGTTTACAGCAGTTGGTTGGGCACTTGGTTTAACTGATTATTTACTTCCTAGACCTGATGATAATGGTGCTCAAGAAAATATGAATGGGGAGCCAGCTAGGCAGGACAGGCTACAGGTTGTACAAGGAGGAATACCTGACCGGGGAATGGTAGCCTTTGCAGGCAATGAAGTGAACAGGGATCTTCTTGGATCTGGAGACTTGAATGTTGGAGATGACTTTGAAATTGATGAACAATCTGATTCTGATTATGGTTTTGTGCTGCGCATTGTACTCTTGCTGGTGGTTGCTTGGATGACTCTGCTTGTGTTCAATTCTGCACTGATAGTTGTACCAATTTCACTTGGGCGGGCACTTTTCCATGCCATTCCTCTTCTCCCCATCACTCATGGCATTAAGTGCAATGATTTATATGCTTTCATCATGGGAAGCTATGTCATATGGACGGCTGTTACTGGAGCAAGATACTCAATTGAACAAATTAGTAAGAGGATGGTTTCAACTTTATTTAGCCAAATTTCCAAGTGGTGTGCGATTGTTATCAAGAGTTCTGCTCTTTTGTCTATATGGATATTTGTCATTCCAGTGCTCATTGGGCTCCTTTTTGAACTTTTGGTTATTGTACCAATGAGAGTTCCGGTGGATGAAAGTCCAGTGTTCCTCCTCTATCAAGACTGGGCCTTGGGGCTTATTTTTCTTAAAATATGGACTAGATTGGTTATGTTGGACCACATGATGCCGCTCGTGGACGAAAGCTGGCGAGTCAAATTTGAGAGGGTGAGGGAGGATGGTTTCTCAAGGTTGCAAGGGCTATGGGTCTTGAGGGAGATTGTGCTTCCGATCATAACGAAACTGTTGACAGCATTATGTGTGCCATATGTTTTAGCCAGAGGAGTGTTTCCAGTGTTAGGGTACCCATTGGTGGTCAACTCTGCCGTATATAGGTTTGCCTGGTTGGGATGCCTCTCTGTCAGCCTTTTGTGCTTCTGTGCCAAGCGATTCCATGTCTGGTTCACAAACCTCCATAACTCAATACGTGATGATCGTTATTTGATCGGTCGTCGGCTGCATAACTTTGGGGAAGTTGACAAGGCAAATGAAGCCACAACTTCTGCAGTTACAGAGAGTGCGAATTCACTGGGCACTGCTTTGATACCACATGACCGTGAAGCAGATGTTGGACTACGCCTGCGGCATGCAAATCGACAGGGTGACTGA 3345 0.4433 MEIDHEPPPSNDDSAKAAESPVNSSVPSFSSSSCSSSSSPRGLKEKENEANASTSAKYDDEDEEEEDVCRICRNPGDAENPLRYPCACSGSIKFVHQECLLQWLNHSNARQCEVCKHAFSFSPVYAPNAPARLPFQEFIVGMAVKACHVLQFFLRLSFVLSVWLLIIPFITFWIWRLAFVRSFGEAQRLFLSHLSTAVILTDCLHGFLLSASIVFIFLGVTSLRDYFRHLREIGGQDVDREDEVDRNGARIARRPVGQANRNVVGDGNVEDAGGVQGIVVPAQAPRRNGENVAARWEMQAQRLEAHVEQMFDGLDDADGAEDVPFDELVGMQGPVFHLLENAFTVLASNMIFLGAVIFVPFSLGRIVLHYLSWFFSTASGPVLSTVIPLTDTALSLANITLKNALTAVKNLSSEAQESGLIGQVAEMLKVNASGLSEMSKNISDNVSADYLKGGSFGTSRLSDVTTLAIGYMFILTLLFCYFGIVALIRYTRGEPLIIGRFYGIVSVAETIPSLLRQFLAAMRHLMTMVKVAFLLVIELGVFPLMCGWWLDVCTIRMFGKTMAHRVQFFSASPLASSLVHWIVGIAYMLQISIFVSLLRGVLRNGVLYFLRDPADPNYNPFRDLIDDPVHKHARRVLLSVAVYGSLIVMLVFLPVKLAMRMAPSIFPLDISVSDPFTEIPADMLLFQICFPFAIEHFKLRTTIKSLLRYWFTAVGWALGLTDYLLPRPDDNGAQENMNGEPARQDRLQVVQGGIPDRGMVAFAGNEVNRDLLGSGDLNVGDDFEIDEQSDSDYGFVLRIVLLLVVAWMTLLVFNSALIVVPISLGRALFHAIPLLPITHGIKCNDLYAFIMGSYVIWTAVTGARYSIEQISKRMVSTLFSQISKWCAIVIKSSALLSIWIFVIPVLIGLLFELLVIVPMRVPVDESPVFLLYQDWALGLIFLKIWTRLVMLDHMMPLVDESWRVKFERVREDGFSRLQGLWVLREIVLPIITKLLTALCVPYVLARGVFPVLGYPLVVNSAVYRFAWLGCLSVSLLCFCAKRFHVWFTNLHNSIRDDRYLIGRRLHNFGEVDKANEATTSAVTESANSLGTALIPHDREADVGLRLRHANRQGD 1114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g01578 1114 CDD RING_CH-C4HC3_MARCH6 68 117 - -
Accr1g01578 1114 FunFam Probable E3 ubiquitin ligase SUD1 54 127 - -
Accr1g01578 1114 ProSiteProfiles Zinc finger RING-type profile. 69 116 IPR001841 -
Accr1g01578 1114 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 52 127 IPR013083 -
Accr1g01578 1114 MobiDBLite consensus disorder prediction 42 57 - -
Accr1g01578 1114 MobiDBLite consensus disorder prediction 1 61 - -
Accr1g01578 1114 SUPERFAMILY RING/U-box 63 119 - -
Accr1g01578 1114 MobiDBLite consensus disorder prediction 16 41 - -
Accr1g01578 1114 Pfam RING-variant domain 69 115 IPR011016 GO:0008270
Accr1g01578 1114 ProSiteProfiles Zinc finger RING-CH-type profile. 61 122 IPR011016 GO:0008270
Accr1g01578 1114 PANTHER SSM4 PROTEIN 53 1070 - -
Accr1g01578 1114 SMART ringv_2 68 116 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g01578 Accr-Chr1 45134087 45140376 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g01578 9 136 C3H Transcription Factor Family AT1G50440 29.710 3.18e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g01578 K10661 - gmx:100813205 1871.29