Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g01449 ATGGCAGACGCAGACCCAGTTCCTCCGAAGAAGACGAAAGGCCAGCAGAAAATCGAAGTCAAAGCGATGGACGACGCTAAGAAGCGAAGTGTCACATTCACAAAACGCAAAGCTGGCCTTTTCAGGAAGGCAGACCAGCTCTGCAATCTCACCGGCGCCCAGGTGGCTCTCATGGTGATTTCTCCGGGAGGCAGGCCGTTCAAATTCGGCAATCCAGACATGGACACGGTGATAGCGAGGTACAAGAGTCACGCGCCGGCGTCGGTGACGTTAGAGCGGCAGAAAGCGGAGCTAAGGGAAATCATGGAACAGCTGGCGTACGAGAATAGGCGAACCCAGCAACTGAGGAATAATAGGCGACACATGATGACGGAAACGTGGATGGCTGCTCCAACTAAAACATTTTCTCCGCCTCAACAAGAGATAATTAGGGAGCGAATGGAGCAACTGAACAATGTGCTCTCTCTAGGCTTCAACTCATTTGGATTCTGGTGGCTGCCTCCGGATTCCACGTTGCCGGGGCTCCAGGCGAGTTCTGGGCTTTCATGTGGGTCCTTCACGGTCCCGGTGACTGAAAGTCAGAATTTTGGAGGTAACATGTTACTTACACCCTCTGGTAACTTCTACACTGGTGAATCGCCCTCGGCGGCGGTACCAGCTGGATCTCAGAATCTTATGTTTACAGACAACATGATGCTGAACACCACAGAAAGCTTCTACACAGGCGAATCATCGTCAATGGCGCCGGCGGGTACCCAGAATCAAATGTCAGAGGGTAAAATTGTACTTACACCTCCCGGTAACTTCTACACAGGCGAATCGTTCTCTATGTTGCCGGCGGTGAATCAGAATCATGTTTTTGAGGATAACATGATGGTTACACCTCCTGGAAACTTCTACACAGGCGAATCGCCTTATTCAATGGTGCCTGCGGAGACTCTGAATGATCATATGTTTCAGAATAACATGATGCTGGACAACGATGGCAGCTTCTACACATGTGGATCCTCGTCAATGGCGTCAGAAGCTCAGAGCACACTATTTGATAATAATATGGTCTTTGCACCTAATGATAACTTCTTTACAAGTGGATCCTTGTCGGAAGAACCGACTATGAATCAAATGATTGATGAAAACATTATGATTCCTCCAAATGATAGCTTCTATATATGTGGACCCTCGGCGGTAGTGCCACCACCGGTTTATGAGAATCAAATATTTGATGAAAACATTATGGTTCTTCCAAATGACAATTTCTATACAAGCGGATCCTCTGCGGTGGTTCCACCACGGCCACCGCCGGCGGATGAGAATCAAATATTTGATGAAAACATTATGGATCCTCCAATTGACAATTTCTATACAAGCGGATCCTTGGTGGTGGTGCCACCACCGCCACCGCCGGCGGATGAGAATCAAATATTTGATGAAAGCATTATGGCTCCTCCTCCACATGATAACTACAACACATTTGAATCTTCGACGGTGCCGGCAACTGATGATGAGAATCTGTTTAGTGACGAAAACTTGAGGTTGTTTCTAGGTGATGATCAATTCTGTAGAAGCAGTTCTTCTATGGTGCCGCCGGCGGAGAATCAAATGTTTGATGGACATGTGGTGGCTCAGCCGCAGCATCCGCCTTGTCATGGACATGGTGCTGGACCTTCAGGGTTCAACTGA 1680 0.4821 MADADPVPPKKTKGQQKIEVKAMDDAKKRSVTFTKRKAGLFRKADQLCNLTGAQVALMVISPGGRPFKFGNPDMDTVIARYKSHAPASVTLERQKAELREIMEQLAYENRRTQQLRNNRRHMMTETWMAAPTKTFSPPQQEIIRERMEQLNNVLSLGFNSFGFWWLPPDSTLPGLQASSGLSCGSFTVPVTESQNFGGNMLLTPSGNFYTGESPSAAVPAGSQNLMFTDNMMLNTTESFYTGESSSMAPAGTQNQMSEGKIVLTPPGNFYTGESFSMLPAVNQNHVFEDNMMVTPPGNFYTGESPYSMVPAETLNDHMFQNNMMLDNDGSFYTCGSSSMASEAQSTLFDNNMVFAPNDNFFTSGSLSEEPTMNQMIDENIMIPPNDSFYICGPSAVVPPPVYENQIFDENIMVLPNDNFYTSGSSAVVPPRPPPADENQIFDENIMDPPIDNFYTSGSLVVVPPPPPPADENQIFDESIMAPPPHDNYNTFESSTVPATDDENLFSDENLRLFLGDDQFCRSSSSMVPPAENQMFDGHVVAQPQHPPCHGHGAGPSGFN 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g01449 559 ProSiteProfiles MADS-box domain profile. 13 73 IPR002100 GO:0003677|GO:0046983
Accr1g01449 559 Gene3D - 26 95 IPR036879 GO:0003677|GO:0046983
Accr1g01449 559 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 24 69 IPR002100 GO:0003677|GO:0046983
Accr1g01449 559 SMART madsneu2 13 72 IPR002100 GO:0003677|GO:0046983
Accr1g01449 559 PANTHER MADS BOX PROTEIN 16 150 - -
Accr1g01449 559 PRINTS MADS domain signature 50 71 IPR002100 GO:0003677|GO:0046983
Accr1g01449 559 PRINTS MADS domain signature 15 35 IPR002100 GO:0003677|GO:0046983
Accr1g01449 559 PRINTS MADS domain signature 35 50 IPR002100 GO:0003677|GO:0046983
Accr1g01449 559 SUPERFAMILY SRF-like 14 91 IPR036879 GO:0003677|GO:0046983
Accr1g01449 559 Coils Coil 88 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g01449 Accr-Chr1 42681845 42683524 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g01449 10 217 Type I MADS-box Gene Family AT5G60440 32.701 8.27e-24 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Accr1g01449 SRF-TF 1.3e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g01449 - - pcin:129293116 460.299