LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr1g01431	ATGATTTTTTTCTTCTTCTTCTTCTTCATCGTCATCTTCAGCGCCACCCAATCAGCCGCCTCTGTATTCAACGACGTCAACTGCACAGCCAACATCACTTTCACTCCTAACGGCACCTTCCAAAGTAACCTCGCCACCCTCCTCTCCTCCCTCTCCTCCAACGCCACCGGCGGCACCAGATTCTACAACGCCACCATGGGCGGCACCGGCGGAGCAAACACCGTATATGGCCTCTTCATCTGCCGCGGGGATGTCCCGTATCCACTGTGCAGCGAGTGCGTTAACTTCGCCACACAAAGAATAAGCTCCTCGTGTCCTTCAGCGAAAGAAGCCATTATTTGGTACAACGAGTGCTTGCTTCGGTATTCCCATAGGCTTATTTTCTCTTCCATGGAAGAATGGCCGAGATATCAGATCAAGATTCCGTTGGGCGACCCTATGCTTTTAAGAACTCGTCGTTTTTACGATACGTTGGGATCTATTTTGAATGATCTGGTAGATGAAGCAGCTGAGGCTCTTGGGAAATCTGATTCCAAGTATGGTGTTCAGCAAGGTGACGCGTCGGGCAACACGACGCTGTACGGATTGGCTCAGTGCACGCCGGACTTAGCCGCCGGCGACTGCAGGCGGTGTGTCCGGGATGCGATAGAGGAGATCACGACGTCGTGTTGCGGAGGTAGCATTGGACAAAGTGTAATGTTGCCCAGTTGCTTTGTTCGCTATGAAACTTATCCATTTTATCAACATTCCGGAACGTCGACACCCTCGCCGTCGGGGGCTAGCGGGAAAAACAATAAACTGCGTACACAAATTATTGCAATTATTGTCCCCTCGATTATTGTTTTGGTGGCGATAGTCGTTTTGTGCAACTATATGGTACCCACAAATTCAAAGAAGAAATCACAAAGAACCATTGATCTCTCGGAAAACTTTGGGGTTGAAATTGTTTCCACAATGGATTCCTTGCAAATTGACATGGCTATAATTAAAGTAGCTACGAACAATTTTTCTGAAGGAAGCAGGATTGGCAAAGGTGGATTTGGAGAAGTTTACAAGGGAGTTCTTCGTAATGGACAAGAGATAGCTGTGAAGAGATTGTCAAGAACTTCTTCGCAGGGAGTTGAAGAATTTAAAAATGAGGTTTTGCTTATAGCTAAACTTCAACATAGAAATTTAGTGAGGCTACTAGGATTCTGTCTTGAAGACAAAGAGAAGATACTCGTCTATGAATATGTGCCTAACAAAAGCCTTAATCACTTTCTATTTGATCCTTTGAAGCAAAGAGAATTAACTTGGGCCGAACGGTTTAAGATTATAAGAGGAATTGCTCGAGGAATTCTCTATTTGCATGAAGACTCTCGTCTTAAGATCATACATCGTGATCTGAAACCAAGCAATGTTTTGTTAGATAGCAACATGAATCCAAAAATCTCAGATTTTGGCATGGCAAGACTAATAACATTGGACCAAATTGAAGGAAGCACAACTAGGATTGTTGGAACATATGGTTATATATCTCCAGAGTATGCCATGCATGGATATTTTTCTATAAAATCCGACGTCTTTAGTTTTGGAGTTATGATGCTTGAGATTATCAGTGGAAGAAAGAATTCTTGTTCTTATGATTCATGCCGTATCGATGATCTTTTGAGCTATGCTTGGAGAAAATGGAAGGAAGAATCAATAGAAGAATTGATGGATCCAGCAGTGAAAGAATCATATTCTCAACAAGAAGTGTATAGGTGCATTCAAATTGGTTTATTGTGCGTTCAAGAAAATCCAGATGATAGGCCTACAATGGGAAACGTTGCTTCCTATCTAAGCAACGTTACAGTTGAATTACCATATCCTCTAGAACCTGCATTTTTCATGCAAGGTAGAAGAAGACGTTACAATGTTGAACATGGTCCTAATTTTGATCACTCCACCAACTACTCTGTCTCCTCATCCATTAATGAGATGTCTATCAGCAAATTTTTCCCTCGCTAA	1989	0.4284	MIFFFFFFFIVIFSATQSAASVFNDVNCTANITFTPNGTFQSNLATLLSSLSSNATGGTRFYNATMGGTGGANTVYGLFICRGDVPYPLCSECVNFATQRISSSCPSAKEAIIWYNECLLRYSHRLIFSSMEEWPRYQIKIPLGDPMLLRTRRFYDTLGSILNDLVDEAAEALGKSDSKYGVQQGDASGNTTLYGLAQCTPDLAAGDCRRCVRDAIEEITTSCCGGSIGQSVMLPSCFVRYETYPFYQHSGTSTPSPSGASGKNNKLRTQIIAIIVPSIIVLVAIVVLCNYMVPTNSKKKSQRTIDLSENFGVEIVSTMDSLQIDMAIIKVATNNFSEGSRIGKGGFGEVYKGVLRNGQEIAVKRLSRTSSQGVEEFKNEVLLIAKLQHRNLVRLLGFCLEDKEKILVYEYVPNKSLNHFLFDPLKQRELTWAERFKIIRGIARGILYLHEDSRLKIIHRDLKPSNVLLDSNMNPKISDFGMARLITLDQIEGSTTRIVGTYGYISPEYAMHGYFSIKSDVFSFGVMMLEIISGRKNSCSYDSCRIDDLLSYAWRKWKEESIEELMDPAVKESYSQQEVYRCIQIGLLCVQENPDDRPTMGNVASYLSNVTVELPYPLEPAFFMQGRRRRYNVEHGPNFDHSTNYSVSSSINEMSISKFFPR	662

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr1g01431	662	SUPERFAMILY	Protein kinase-like (PK-like)	323	635	IPR011009	-
	Accr1g01431	662	ProSitePatterns	Protein kinases ATP-binding region signature.	342	364	IPR017441	GO:0005524
	Accr1g01431	662	ProSiteProfiles	Gnk2-homologous domain profile.	22	127	IPR002902	-
	Accr1g01431	662	SMART	serkin_6	336	607	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Accr1g01431	662	Pfam	Protein tyrosine and serine/threonine kinase	339	606	IPR001245	GO:0004672\|GO:0006468
	Accr1g01431	662	FunFam	Cysteine-rich RLK (RECEPTOR-like protein kinase) 23	21	126	-	-
	Accr1g01431	662	CDD	STKc_IRAK	342	607	-	-
	Accr1g01431	662	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	457	469	IPR008271	GO:0004672\|GO:0006468
	Accr1g01431	662	Gene3D	-	149	246	IPR038408	-
	Accr1g01431	662	Gene3D	-	21	126	IPR038408	-
	Accr1g01431	662	ProSiteProfiles	Gnk2-homologous domain profile.	136	246	IPR002902	-
	Accr1g01431	662	Pfam	Salt stress response/antifungal	28	124	IPR002902	-
	Accr1g01431	662	Pfam	Salt stress response/antifungal	152	244	IPR002902	-
	Accr1g01431	662	FunFam	Cysteine-rich RLK (RECEPTOR-like protein kinase) 23	297	411	-	-
	Accr1g01431	662	Gene3D	Transferase(Phosphotransferase) domain 1	412	614	-	-
	Accr1g01431	662	ProSiteProfiles	Protein kinase domain profile.	336	607	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Accr1g01431	662	FunFam	cysteine-rich receptor-like protein kinase 10	412	614	-	-
	Accr1g01431	662	Gene3D	Phosphorylase Kinase; domain 1	296	411	-	-
	Accr1g01431	662	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	24	658	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr1g01431	Accr-Chr1	42151955	42155679	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr1g01431	3	662	Receptor kinase-like Gene Family	AT4G05200	43.824	0.0	566

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Accr1g01431		PK_Tyr_Ser-Thr	3.5e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr1g01431	-		-	var:108324780	839.721