Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g01428 ATGTTTTTCTTCATCATTTCCATCTTATTTCTTCATCATGTCTCAGGTTCAGACCCTCTCTTCACTTGGTGTTCTCCTGGATTCCAAGATTACTCACTGAACTCTACATTTCATAACAACCTTGAGCTTCTTCTGGGGTCACTTTCCGGCAACATTTCAGCCTCAGGTTTCTATAACACATCCACTGGAGAAGACCCAGATAAGGTCTATGGACTTGCACTATGCAGAGGAGACATAAATTCAACAATCTGTAAGGACTGTGTTGAGAAAGCAAGCCAAGATATACTCAACAATTGTAAGAGTCAAGATGCTATTATATGGTATGATCTTTGTCAAGTAAGATACTCCTTTCAGATGTTCATTTCAATGATGGTTTATACTGGTAAGTATCCAGATGAAAATAATCAGGCCAAGAACGTGTCGGATCCTGCTCGGTTCAGCCAGGTTCTGACATACTTGATGAATAACTTGTCCAATGAGGCTGCCTTTGTTCCTATCAAGAACATGTTTGCTTCTGGGGAAATTGAATTTTCTCAGAAAATTACAATTTATGGTCTAGTACAATGCACAAGAGACATCTCTGGAACATTATGCTATAATTGTTTGAATTCTGCTCTAGGAGACCTTGGAGCTTGTTGCTCATCCCGTGAAAGTGGGACAGTTCTTAGTCGAACTTGCAATGTCAGGTTTGGATTGTCTCAGTTCTTCAATACTTCTTCTCAGTACCTTGTCGTTTATCCAACTTCTAAAGGAGCAGGAGGGAAATTGAAGACATGGATGCTTGTTCTGATTATATGTGCATCAGTGTTCGTGTTAGCAGTTCTTACTGGTTTCTGCATTGCCTGTTTCCATAAAAAACAAGGGGAAGACAGAGATGATGAAAAAAGCGAAAAGATGCTACTACAACAATTGGCGACCCCCAAGAGTGTAACAATTACACAAGATGGAGAATTAATTAGCTCTGAAGAACTTGTGTTCATGAGTTTTGCAACAATTAAGTTCGCCACCGATGACTTTTCTGATTCAAACAAGCTTGGACAGGGAGGTTTTGGTTCTGTATACAAAGGTGTTCTTCCGGATGGAAATGAAATAGCAGTCAAAAGGTTATCAAGGAAGTCTTGGCAAGGCACAGAAGAATTCAAAAATGAGATCATTATGATTGCAAAACTTCAGCATAAGAATCTTGTGAAGCTGTTGGGATGTGGCTTGGAAGGAGAAGAGAAGTTTCTCATATATGAATACATGTCCAATCAAAGCCTTGACAAATTTATTTTTGATTCAGAAAAACGTTCACAGCTTGATTGGAATACATGCTATGGCATTATCATGGGCATAGCTAGAGGATTACTTTATCTTCATGAAGAGTCGAGGCTTAGAGTCATTCATAGAGACTTGAAACCAAACAACATATTGCTTGACCATGACATGGTTGCTAAGATATCAGATTTTGGTATGGCAAGAATTTTTTGTGAAAACCAAAATACTGCTAACACCAAAAGAGTTGTGGGAACATATGGATACATGGCTCCAGAATACGCAATGGGAGGATTGTTCTCAGTGAAATCTGATATCTTTAGCTTCGGTGTCATATTGCTTGAGATCATCAGTGGAAAAAGAAGTAGTGGCTTTTATGCAACCAAACTTGCCTCTACCCTTCTAGCATATGCATGGAATTTATGGAATGAAGGGAAAGAAATGGAATTTGTGGATCCTCTTTTAAAGGCAGAATGTCTTTCTTCAGAAGTTTCAAGATGCATGAACATAGGACTGTTATGTGTACAGGAAGACCCAGAAGACAGACCCACCATGTCAGATGTTATGGTTCTGTTAGGAAGTGAATCAATGTCTCTTGCACAACCAAAAAAACCTGCATTTTCTGTGGGCAGATCAATCAAAGTTGATCCATCATTGATGACAACTTCCTCTGTGAATCATATAATGCTCTCTACTGTTCAACCTAGATGA 1965 0.3898 MFFFIISILFLHHVSGSDPLFTWCSPGFQDYSLNSTFHNNLELLLGSLSGNISASGFYNTSTGEDPDKVYGLALCRGDINSTICKDCVEKASQDILNNCKSQDAIIWYDLCQVRYSFQMFISMMVYTGKYPDENNQAKNVSDPARFSQVLTYLMNNLSNEAAFVPIKNMFASGEIEFSQKITIYGLVQCTRDISGTLCYNCLNSALGDLGACCSSRESGTVLSRTCNVRFGLSQFFNTSSQYLVVYPTSKGAGGKLKTWMLVLIICASVFVLAVLTGFCIACFHKKQGEDRDDEKSEKMLLQQLATPKSVTITQDGELISSEELVFMSFATIKFATDDFSDSNKLGQGGFGSVYKGVLPDGNEIAVKRLSRKSWQGTEEFKNEIIMIAKLQHKNLVKLLGCGLEGEEKFLIYEYMSNQSLDKFIFDSEKRSQLDWNTCYGIIMGIARGLLYLHEESRLRVIHRDLKPNNILLDHDMVAKISDFGMARIFCENQNTANTKRVVGTYGYMAPEYAMGGLFSVKSDIFSFGVILLEIISGKRSSGFYATKLASTLLAYAWNLWNEGKEMEFVDPLLKAECLSSEVSRCMNIGLLCVQEDPEDRPTMSDVMVLLGSESMSLAQPKKPAFSVGRSIKVDPSLMTTSSVNHIMLSTVQPR 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g01428 654 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 18 120 - -
Accr1g01428 654 ProSitePatterns Protein kinases ATP-binding region signature. 345 367 IPR017441 GO:0005524
Accr1g01428 654 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 32 632 - -
Accr1g01428 654 SUPERFAMILY Protein kinase-like (PK-like) 321 609 IPR011009 -
Accr1g01428 654 ProSitePatterns Serine/Threonine protein kinases active-site signature. 460 472 IPR008271 GO:0004672|GO:0006468
Accr1g01428 654 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 304 414 - -
Accr1g01428 654 Pfam Salt stress response/antifungal 138 231 IPR002902 -
Accr1g01428 654 Pfam Salt stress response/antifungal 29 117 IPR002902 -
Accr1g01428 654 ProSiteProfiles Protein kinase domain profile. 339 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr1g01428 654 SMART serkin_6 339 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr1g01428 654 ProSiteProfiles Gnk2-homologous domain profile. 19 120 IPR002902 -
Accr1g01428 654 Gene3D Phosphorylase Kinase; domain 1 302 414 - -
Accr1g01428 654 ProSiteProfiles Gnk2-homologous domain profile. 128 235 IPR002902 -
Accr1g01428 654 FunFam Cysteine-rich receptor-like protein kinase 10 132 235 - -
Accr1g01428 654 Pfam Protein tyrosine and serine/threonine kinase 342 608 IPR001245 GO:0004672|GO:0006468
Accr1g01428 654 CDD STKc_IRAK 345 606 - -
Accr1g01428 654 Gene3D Transferase(Phosphotransferase) domain 1 415 622 - -
Accr1g01428 654 FunFam Uncharacterized protein 415 616 - -
Accr1g01428 654 Gene3D - 20 120 IPR038408 -
Accr1g01428 654 Gene3D - 129 235 IPR038408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g01428 Accr-Chr1 41945064 41947843 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g01428 3 625 Receptor kinase-like Gene Family AT4G05200 42.457 8.23e-170 499
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Accr1g01428 PK_Tyr_Ser-Thr 2.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g01428 - - pcin:129293128 984.941