LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr1g01427	ATGGTTGATTCGCCAAAGCTATTCATTCTTCTTCTTTGCACTATTTCTTTCCTGTCAGGCGTTTCCTTCGCTGACCCACCATATCAAAATTGTTCAACAAGCAGTAATTACACCAAAGGAAGCTCCTTTCAGAACAACCTTAACAACATCCTCACTTCTCTATCTTCCCACGCTTCAATCTTCAAATCTTACAATGTCTCTTATGGAAAAAACCCAGATACAGTCTATACCATCTTCATGTGCCTCGACTATGTTTCAAATCAAACATGCCAAGATTGCATAGCCACAGCTTCACAAGACATTCTTAAACTCTGTCCCCAAGCAGAAGAAGCAATTGTTTGGGAAGAACAATGTCAACTACAATATTCCAGCAAGAACTTCCTCGGAAAAGTGGATGTCACGGGAAAATTGGGGTTTGATAATCAACAGAATATTTCAGAACCAACGAAGTTTGAGTCTGAGGTTAATGGGTTATTGTATAGTCTTACAGATAAGGTATCTTCTAATGTTTCTACTAACTTGTATGCTATTGGAGAGGCACCTTTTGAAGAGAAAACAATATATGGATTAGTTCAGTGTACCAGAGATTTATCAGCAAGTGATTGTGGTATTTGTCTAAAAAGCGCGATAAGTTATCTACCTGTTTGTTGTTATTCCTCAATTGGAGCTAGAGTTTTAAGTCGTAGCTGCTACTTGAGATTTGAATTATATGCATTTTACAATGGTGAACCTGAACCAAATGTTCCATTTACACCAAGTGGCAAAAGTGCAACAAGCAAAACTGGCATGATTATTGGAATTATAGCAGCGACTGGCTTGGCAATAGCGATTTTGAGTTTCTGCGTTTACTTCCTGAGGAAGAAGAGAACTCAGAAAAGTAAGGGTGGAATATACAGTCATGGGATAGATCTTCTTACATTTGGGCAAAGAGGTGAAACAGTGTTCCAGAATCACCAGAATTTTGGTAGACGAAATGACAAGATATCTGAGGATTTGCCTTATTTTGATCTTGAAACTCTGTGTGTTGCTACCAAAAACTTTTCTGATTCAAATAAGCTTGGTCAAGGCGGCTTTGGACCTGTTTACAAGGGCGTATTAAGTGATGGCCAGGAAGTAGCAATCAAGAGGCTTTTAACAGGCTCAGAACAGGGCTCAGAGGAATTCATAAATGAGGTTCTGCTGATTCTGAAACTTCAACACAAAAATCTAGTGAGGCTTCTTGGATTTTGTTTAGATGCAGAAGAAATGCTTCTTGTTTATGAATTTCTGCCTAATGGCAGCCTTGATGCTGTCCTTTTCGATCCAAGGCAGCGCGCACGACTAAGTTGGATCAAACGTGTCGATGTAATAGGTGGAATAGCAAGAGGGATTCTTTATCTTCATGAAGATTCTCGATTAAAGATAATTCATAGAGATCTAAAAGCAAGTAATATATTGTTAGATTACGACATGAATCCAAAAATCTCCGATTTTGGATTGGCAAGAATATTTGCTGAAGCCGAAGGTGAAGCTAACACTGCTACTATAGTTGGTACATATGGATACATGGCTCCGGAATATGCTATGGAAGGATTATATTCCATAAAATCCGATGTCTTCAGTTTTGGAGTGTTATTGCTCGAAATTATCACTGGGAGACGCAATGCAGGTTTCTATCACTCTAAACATGCTCCTAGCCTTCTGGCATATGCATGGAATCTATGGAATGAGGGGAATGCACTGGAATTGATGGACCCTCTAGTAGCTGATTCCTGCCCTGAAGATCAATTTCTAGTACACATGCATGTTGGATTACTATGTGTTCAAGAAGATGCATGTGACAGACCAACCATGTCTTCTGTTGTTTTAATGTTGAAAAGTCAATCACCAACTCTTGCTCAACCCCAAAGGCCACCCTTCTGTGTGGGAAGAATCATTGATAACGAACAATCCTCAGTCAATAACTTGGCAATTTCTGATATACTGCCCCAGTGA	1974	0.3936	MVDSPKLFILLLCTISFLSGVSFADPPYQNCSTSSNYTKGSSFQNNLNNILTSLSSHASIFKSYNVSYGKNPDTVYTIFMCLDYVSNQTCQDCIATASQDILKLCPQAEEAIVWEEQCQLQYSSKNFLGKVDVTGKLGFDNQQNISEPTKFESEVNGLLYSLTDKVSSNVSTNLYAIGEAPFEEKTIYGLVQCTRDLSASDCGICLKSAISYLPVCCYSSIGARVLSRSCYLRFELYAFYNGEPEPNVPFTPSGKSATSKTGMIIGIIAATGLAIAILSFCVYFLRKKRTQKSKGGIYSHGIDLLTFGQRGETVFQNHQNFGRRNDKISEDLPYFDLETLCVATKNFSDSNKLGQGGFGPVYKGVLSDGQEVAIKRLLTGSEQGSEEFINEVLLILKLQHKNLVRLLGFCLDAEEMLLVYEFLPNGSLDAVLFDPRQRARLSWIKRVDVIGGIARGILYLHEDSRLKIIHRDLKASNILLDYDMNPKISDFGLARIFAEAEGEANTATIVGTYGYMAPEYAMEGLYSIKSDVFSFGVLLLEIITGRRNAGFYHSKHAPSLLAYAWNLWNEGNALELMDPLVADSCPEDQFLVHMHVGLLCVQEDACDRPTMSSVVLMLKSQSPTLAQPQRPPFCVGRIIDNEQSSVNNLAISDILPQ	657

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr1g01427	657	Pfam	Salt stress response/antifungal	31	124	IPR002902	-
	Accr1g01427	657	Pfam	Salt stress response/antifungal	143	237	IPR002902	-
	Accr1g01427	657	ProSiteProfiles	Protein kinase domain profile.	347	625	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Accr1g01427	657	ProSiteProfiles	Gnk2-homologous domain profile.	133	239	IPR002902	-
	Accr1g01427	657	Gene3D	Phosphorylase Kinase; domain 1	311	422	-	-
	Accr1g01427	657	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	312	422	-	-
	Accr1g01427	657	CDD	STKc_IRAK	353	619	-	-
	Accr1g01427	657	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	468	480	IPR008271	GO:0004672\|GO:0006468
	Accr1g01427	657	Pfam	Protein tyrosine and serine/threonine kinase	350	615	IPR001245	GO:0004672\|GO:0006468
	Accr1g01427	657	ProSiteProfiles	Gnk2-homologous domain profile.	25	127	IPR002902	-
	Accr1g01427	657	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	29	640	-	-
	Accr1g01427	657	Gene3D	-	26	127	IPR038408	-
	Accr1g01427	657	Gene3D	-	137	239	IPR038408	-
	Accr1g01427	657	FunFam	Liguleless narrow1	423	626	-	-
	Accr1g01427	657	SMART	serkin_6	347	625	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Accr1g01427	657	Gene3D	Transferase(Phosphotransferase) domain 1	423	629	-	-
	Accr1g01427	657	FunFam	Cysteine-rich receptor-like protein kinase 10	136	239	-	-
	Accr1g01427	657	FunFam	Cysteine-rich receptor-like protein kinase 28	27	126	-	-
	Accr1g01427	657	SUPERFAMILY	Protein kinase-like (PK-like)	329	638	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr1g01427	Accr-Chr1	41940918	41943466	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr1g01427	24	656	Receptor kinase-like Gene Family	AT4G05200	41.629	1.45e-173	509

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Accr1g01427		PK_Tyr_Ser-Thr	2.1e-47	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr1g01427	-		-	pcin:129293128	1090.87