Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g01413 ATGGACTCTCAAAGGTTGTTGCTTTCCCGAGAAAACCCTAGGCCCCTGGGTTTCCCTGCTGGGCGAGTACTCCCTTCTGCCACTGTAAAATCCATGCCCAATGAGATGGCTCAGAAGCCAATTGCTCCGGCGATATTGGAACGGTTCAAGGCTCTGCTCAAGCGGCGCTACGATCAACGGGGGTCTTTGGCAGACGACGATGTGCCGCAGCTGCCCACTGAGGAGATTGTGCAGCTTTACGATATAGTCTTGTCTGAGCTTACTTTAAATTCGAAGCCCATCATCACCGAACTTACCATCATTGCAGGAGACCATAAAGAGCATGGCAAGGGTATAGCTGATGCAATTTGCGATCGAATTCTCGAGGTGCCTTTGGAGCAAAAGCTTCCTTCACTATATCTTTTAGACAGTATTGTGAAGAATATTGGTGGGGAGTATGTTAGATACTTCTCCTCACGTCTTCCTGAAGTGTTCTGTGAGGCATATCAACAAGTTCATCCTAATTTGCATAATGCAATGCGTCATCTCTTTGGTACTTGGTCTACAGTCTTCCCAACTTCTGTTCTCCGCAAGATTGAAGGACAGCTGCATTTTTCTCAAGCAGTTAATAATCAGAATATATCATCTAGCATTAATCCCCCTCGTGCATCTGAGGCTACACAGCGAACTCATGGCATTCATGTTAATCCAAAATACTTGCGACAACTAGAAAACTCAACTATGGACACTGATGGGGGTGAAATGTTGGATTCAACAGGAAGCGTGGGGCATAAAAATTTTGACCTTGGAACTAATAAGATGCATCAGGCTTCAATTAGCAGGCAGGGAAAACATTATCCTGGTGATGGCCGGAATCAATTCCAATTTTCTACAAATGGACTTCAACGCCAAAGTCCAAGAGCTCTTATTGATGCTTATGGCAGTGACAAGAGGACAGAAACCCCAAGCAATAAGCCATTGGTTGAACCGCTTGACATACATGGTATAGAAAACAAGATGGCGTCACCATCATGGCAGAATACTGAAGAGGAGGAGTTTAACTGGGAAGATATGAGTCCAACGTTAATGGAGCATAAGAGAAGCAATGGTATCTTACCATCATCAATTATGTTATCTGGGGAAAGATCTAGTGGTATTGTTGCAGCTAATGCTGCTGCTTTGGGTCAAGATGCCAGAAGTGATTGGAATGGTGGTGGATCATTGGGTCAGATAACTGGATTCCAAAATCACGGTCTGGTCTCCCGTCCTCCTCATGATACCTGGAAGATTTCTCATCATTTGCCTAATTCTTCACAACACCTCATTAACGTTAGAGGTCAAACAAGGAATGCTCATGTGTCTCCTATTGATAGCATTCCAATTACTAAAGTAAACTCATATGGGCTTGAGATTCGTCCACCAACTTTACCTGCATCTTTCCGAACTAGGCCCCCTGTGAATGTGCATGCTAGTCGTCCCCGCTCCTCAAATCCTTCATTGCCGAAACTTGTTGGGAACCAATTTGAAGCAATAAATGGTGGTAACACCATTTTAGATCAAGGTCCTACTAGATCTTTATTCATGCCTGAACAGTTATTGGACAGTGGTGAGAACAATATTGGTAAATTAGCGATTCCTCAGATTCCTAATCAGCTATCAGGGCTAATTTCATCAAACCAGCGTAACCGTGGGCAAGCATTACGACCTCAAATTTTTCCACCTCAGGATGTGCGAGAAAGTTTTGCTGATTCGCAGGCTGCAGCAGCTTCTCAATCTAGTCATGGGGGTTCTTTGCAAAGACATGGTACTGCTATCAGTGCAACTGGGTCCATGTTACCTATTGGTCAGTTTCCATTACTAGTCCAAAATATGGCAAACAACACTTTTCCTATACAGCAGGGAGCCTTGCCTCCATTTCCAGCTCCCCGTCCTCCATCACAAGCGTTGCCTCATAGAAATGGTAGTCCATATACCTCAAGCCAACAGCCAGCTGGTGCATTTTCTGGTCTTATTGGTTCACTTATGGCACAAGGTTTGATTTCATTGACCGGACAAACCCCTGCACAGGATTCTGTTGGAACTGAATTTAATCCCGATGTTCTGAAGATCCGGCATGAGTCTGCAATTGTTGCTTTATATTCTGATCTCCCTCGACAATGCACAACTTGTGGCCTTAGATTCAAGTCTCAAGAGGAGCACAGTAGTCATATGGATTGGCATGTGACTAAGAATCGGATGGCTAAAAATCGTAAGCAGAAGTCTTCTCGTAAGTGGTTTGTGAGTGAGAAAATGTGGCTTAGTGGTGCAGAGGCACTGGGAACAGAAGCAGCACCTGGTTTTTTGCCAACTGAGACCGTAGAGGAAAATAAAGAAGATGAAGAGATGGCTGTGCTGGCTGACGAAGAGCAGAATACATGTGCGTTATGTGGAGAGCCTTTTGAAGAGTTTTATAGTGATGAAACTGAGGAATGGATGTACAGAGGAGCTGTATACCTAAATGTGCCCAAGGGAACAGTGGCAGGCATGGATAGGTCACAGTTAGGTCCAATTGTTCATGCTAAATGCAGATCTGAATCTAACGCTGCGCCTGCTGAAGAATTTAGAGAGGATGACAGGGTCGCTGATGAAGAGGGTAGTCAAAGAAAACGAATGCGGAATTGA 2640 0.4455 MDSQRLLLSRENPRPLGFPAGRVLPSATVKSMPNEMAQKPIAPAILERFKALLKRRYDQRGSLADDDVPQLPTEEIVQLYDIVLSELTLNSKPIITELTIIAGDHKEHGKGIADAICDRILEVPLEQKLPSLYLLDSIVKNIGGEYVRYFSSRLPEVFCEAYQQVHPNLHNAMRHLFGTWSTVFPTSVLRKIEGQLHFSQAVNNQNISSSINPPRASEATQRTHGIHVNPKYLRQLENSTMDTDGGEMLDSTGSVGHKNFDLGTNKMHQASISRQGKHYPGDGRNQFQFSTNGLQRQSPRALIDAYGSDKRTETPSNKPLVEPLDIHGIENKMASPSWQNTEEEEFNWEDMSPTLMEHKRSNGILPSSIMLSGERSSGIVAANAAALGQDARSDWNGGGSLGQITGFQNHGLVSRPPHDTWKISHHLPNSSQHLINVRGQTRNAHVSPIDSIPITKVNSYGLEIRPPTLPASFRTRPPVNVHASRPRSSNPSLPKLVGNQFEAINGGNTILDQGPTRSLFMPEQLLDSGENNIGKLAIPQIPNQLSGLISSNQRNRGQALRPQIFPPQDVRESFADSQAAAASQSSHGGSLQRHGTAISATGSMLPIGQFPLLVQNMANNTFPIQQGALPPFPAPRPPSQALPHRNGSPYTSSQQPAGAFSGLIGSLMAQGLISLTGQTPAQDSVGTEFNPDVLKIRHESAIVALYSDLPRQCTTCGLRFKSQEEHSSHMDWHVTKNRMAKNRKQKSSRKWFVSEKMWLSGAEALGTEAAPGFLPTETVEENKEDEEMAVLADEEQNTCALCGEPFEEFYSDETEEWMYRGAVYLNVPKGTVAGMDRSQLGPIVHAKCRSESNAAPAEEFREDDRVADEEGSQRKRMRN 879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g01413 879 MobiDBLite consensus disorder prediction 482 497 - -
Accr1g01413 879 MobiDBLite consensus disorder prediction 628 642 - -
Accr1g01413 879 MobiDBLite consensus disorder prediction 274 298 - -
Accr1g01413 879 ProSitePatterns Zinc finger C2H2 type domain signature. 713 733 IPR013087 -
Accr1g01413 879 SUPERFAMILY ENTH/VHS domain 73 201 IPR008942 -
Accr1g01413 879 MobiDBLite consensus disorder prediction 847 879 - -
Accr1g01413 879 Gene3D - 69 197 IPR008942 -
Accr1g01413 879 MobiDBLite consensus disorder prediction 577 595 - -
Accr1g01413 879 MobiDBLite consensus disorder prediction 624 656 - -
Accr1g01413 879 ProSiteProfiles CID domain profile. 72 200 IPR006569 -
Accr1g01413 879 MobiDBLite consensus disorder prediction 571 595 - -
Accr1g01413 879 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 47 868 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Accr1g01413 879 SMART 558neu5 75 197 IPR006569 -
Accr1g01413 879 MobiDBLite consensus disorder prediction 284 298 - -
Accr1g01413 879 FunFam polyadenylation and cleavage factor homolog 4 69 197 - -
Accr1g01413 879 MobiDBLite consensus disorder prediction 852 879 - -
Accr1g01413 879 MobiDBLite consensus disorder prediction 469 497 - -
Accr1g01413 879 CDD CID_Pcf11 77 197 IPR047415 -
Accr1g01413 879 Pfam CID domain 86 190 IPR006569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g01413 Accr-Chr1 41783008 41790486 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g01413 1 879 C2H2 Transcription Factor Family AT4G04885 43.918 0.0 624
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Accr1g01413 CID 1.2e-11 CL0020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g01413 K14400 - gmx:100794796 943.725