Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g01403 ATGATGCAGCCTGGACCTGGCATGGCTCCCCCAAACATGGGTCAACAACCCAACCAACAATACCAGCAGCAGCAACCCTACATGATGATGCCACCGCAGGCTCAGGCGCCGCCTATGTGGGCTCCTTCTGCCCAGCCCCCGCCGCCGCAGCAGGCCGTTGCTCCGATGCAATCCACCCAACATGGCCAGCCTAGCAGCGCCGATGAGGTCCGTACCCTTTGGATCGGCGATTTGCAGTACTGGATGGATGAGAACTACCTGTATAATTGTTTTGCGCATACAGGCGAGGTAAATGTTGGTTCTGTGAAAGTCATTCGTAATAAGCAAACTAATGTATCTGAAGGTTATGGGTTTATTGAGTTTTATACTCGTGCTGCCGCAGAGAGAGTTCTTCAAACATTTAATGGCACAATTATGCCTAATGGTGGGCAAAACTATAGATTGAATTGGGCAACTTTTAGTGCTGGTGATAGACGTCATGATGATAGTCCAGATTACACTATTTTTGTCGGAGACTTGGCTGCCGATGTTACAGATTACCTGCTGCAGGAGACGTTTCGGGCTAGATATCCCACAGTTAAGGGTGCAAAGGTTGTAATTGATAGGCTGACTGGGAGGACGAAGGGTTATGGTTTTGTCAAGTTTGGAGATGAGAATGAACAGATTCAAGCTATGACTGAGATGCAAGGGGTTCTTTGCTCAACAAGACCCATGCGAATTGGACCAGCCACAAACAAAAATGTTGGAGGACAGCAAAAAGCTTCCTATCAGAATCCTCAAGGTTCACAGAACGAGAATGATCCAAATAATACAACTATTTTCGTCGGCAATTTGGATCCTAATGTCACTGATGATCATTTGAGGCAAGTTTTTGGTAATTATGGAGAATTAATACATGTGAAGATTCCAGCAGGCAAGAGATGTGGATTTGTCCAATTCGCCGATAGGAGTTGTGCTGAAGAGGCTCTGCGGATTCTAAATGGAACACAGTTGGGCGGTCAAAGTGTCCGACTTTCATGGGGCCGGAGTCCTTCAAACAAGCAGGGTCAGGCAGATCCAAGTCAGTACGGGGGATATTATGGGTATGCTCAAGGGTACGAGAATTATGGATACCCTCCTGCTGCTACACAGGACCCCAACATGTATGGAAGTTATCCAGGCTATGCTAACTACCAACCACCACAGCAACAACAGCAAATGGGGTATAGCTAA 1212 0.4711 MMQPGPGMAPPNMGQQPNQQYQQQQPYMMMPPQAQAPPMWAPSAQPPPPQQAVAPMQSTQHGQPSSADEVRTLWIGDLQYWMDENYLYNCFAHTGEVNVGSVKVIRNKQTNVSEGYGFIEFYTRAAAERVLQTFNGTIMPNGGQNYRLNWATFSAGDRRHDDSPDYTIFVGDLAADVTDYLLQETFRARYPTVKGAKVVIDRLTGRTKGYGFVKFGDENEQIQAMTEMQGVLCSTRPMRIGPATNKNVGGQQKASYQNPQGSQNENDPNNTTIFVGNLDPNVTDDHLRQVFGNYGELIHVKIPAGKRCGFVQFADRSCAEEALRILNGTQLGGQSVRLSWGRSPSNKQGQADPSQYGGYYGYAQGYENYGYPPAATQDPNMYGSYPGYANYQPPQQQQQMGYS 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g01403 403 Gene3D - 247 352 IPR012677 -
Accr1g01403 403 SUPERFAMILY RNA-binding domain, RBD 150 262 IPR035979 GO:0003676
Accr1g01403 403 MobiDBLite consensus disorder prediction 12 30 - -
Accr1g01403 403 MobiDBLite consensus disorder prediction 245 271 - -
Accr1g01403 403 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 271 343 IPR000504 GO:0003723
Accr1g01403 403 FunFam Polyadenylate-binding protein RBP45C 158 249 - -
Accr1g01403 403 CDD RRM1_SECp43_like 72 154 - -
Accr1g01403 403 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 166 245 IPR000504 GO:0003723
Accr1g01403 403 MobiDBLite consensus disorder prediction 31 53 - -
Accr1g01403 403 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 61 356 - -
Accr1g01403 403 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 73 140 IPR000504 GO:0003723
Accr1g01403 403 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 168 231 IPR000504 GO:0003723
Accr1g01403 403 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 273 336 IPR000504 GO:0003723
Accr1g01403 403 Gene3D - 8 160 IPR012677 -
Accr1g01403 403 MobiDBLite consensus disorder prediction 240 271 - -
Accr1g01403 403 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 71 153 IPR000504 GO:0003723
Accr1g01403 403 MobiDBLite consensus disorder prediction 1 65 - -
Accr1g01403 403 CDD RRM2_SECp43_like 165 244 - -
Accr1g01403 403 SMART rrm1_1 272 339 IPR000504 GO:0003723
Accr1g01403 403 SMART rrm1_1 72 149 IPR000504 GO:0003723
Accr1g01403 403 SMART rrm1_1 167 241 IPR000504 GO:0003723
Accr1g01403 403 MobiDBLite consensus disorder prediction 389 403 - -
Accr1g01403 403 FunFam Polyadenylate-binding protein RBP45C 250 353 - -
Accr1g01403 403 SUPERFAMILY RNA-binding domain, RBD 38 155 IPR035979 GO:0003676
Accr1g01403 403 FunFam Polyadenylate-binding protein RBP45 10 157 - -
Accr1g01403 403 SUPERFAMILY RNA-binding domain, RBD 256 369 IPR035979 GO:0003676
Accr1g01403 403 Gene3D - 165 241 IPR012677 -
Accr1g01403 403 MobiDBLite consensus disorder prediction 382 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g01403 Accr-Chr1 41609652 41613478 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g01403 73 350 Eukaryotic Initiation Factors Gene Family AT1G22760 24.567 7.50e-18 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g01403 - - aprc:113864230 587.03