Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g01402 ATGATGCAGCCTGGACCTGGCATGGCTCCCCCAAACATGGGTCAACAACCCAACCAACAATACCAGCAGCAGCAACCCTACATGATGATGCCACCGCAGGCTCAGGCGCCGCCTATGTGGGCTCCTTCTGCCCAGCCCCCGCCGCCGCAGCAGGCCGTTGCTCCGATGCAATCCACCCAACATGGCCAGCCTAGCAGCGCCGATGAGGTCCGTACCCTTTGGATCGGCGATTTGCAGTACTGGATGGATGAGAACTACCTGTATAATTGTTTTGCGCATACAGGCGAGGTTGGTTCTGTGAAAGTCATTCGTAATAAGCAAACTAATGTATCTGAAGGTTATGGGTTTATTGAGTTTTATACTCGTGCTGCCGCAGAGAGAGTTCTTCAAACATTTAATGGCACAATTATGCCTAATGGTGGGCAAAACTATAGATTGAATTGGGCAACTTTTAGTGCTGGTGATAGACGTCATGATGATAGTCCAGATTACACTATTTTTGTCGGAGACTTGGCTGCCGATGTTACAGATTACCTGCTGCAGGAGACGTTTCGGGCTAGATATCCCACAGTTAAGGGTGCAAAGGTTGTAATTGATAGGCTGACTGGGAGGACGAAGGGTTATGGTTTTGTCAAGTTTGGAGATGAGAATGAACAGATTCAAGCTATGACTGAGATGCAAGGGGTTCTTTGCTCAACAAGACCCATGCGAATTGGACCAGCCACAAACAAAAATGTTGGAGGACAGCAAAAAGCTTCCTATCAGAATCCTCAAGGTTCACAGAACGAGAATGATCCAAATAATACAACTATTTTCGTCGGCAATTTGGATCCTAATGTCACTGATGATCATTTGAGGCAAGTTTTTGGTAATTATGGAGAATTAATACATGTGAAGATTCCAGCAGGCAAGAGATGTGGATTTGTCCAATTCGCCGATAGGAGTTGTGCTGAAGAGGCTCTGCGGATTCTAAATGGAACACAGTTGGGCGGTCAAAGTGTCCGACTTTCATGGGGCCGGAGTCCTTCAAACAAGCAGGGTCAGGCAGATCCAAGTCAGTACGGGGGATATTATGGGTATGCTCAAGGGTACGAGAATTATGGATACCCTCCTGCTGCTACACAGGACCCCAACATGTATGGAAGTTATCCAGGCTATGCTAACTACCAACCACCACAGCAACAACAGCAAATGGGGTATAGCTAA 1206 0.4726 MMQPGPGMAPPNMGQQPNQQYQQQQPYMMMPPQAQAPPMWAPSAQPPPPQQAVAPMQSTQHGQPSSADEVRTLWIGDLQYWMDENYLYNCFAHTGEVGSVKVIRNKQTNVSEGYGFIEFYTRAAAERVLQTFNGTIMPNGGQNYRLNWATFSAGDRRHDDSPDYTIFVGDLAADVTDYLLQETFRARYPTVKGAKVVIDRLTGRTKGYGFVKFGDENEQIQAMTEMQGVLCSTRPMRIGPATNKNVGGQQKASYQNPQGSQNENDPNNTTIFVGNLDPNVTDDHLRQVFGNYGELIHVKIPAGKRCGFVQFADRSCAEEALRILNGTQLGGQSVRLSWGRSPSNKQGQADPSQYGGYYGYAQGYENYGYPPAATQDPNMYGSYPGYANYQPPQQQQQMGYS 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g01402 401 FunFam Polyadenylate-binding protein RBP45 10 155 - -
Accr1g01402 401 MobiDBLite consensus disorder prediction 387 401 - -
Accr1g01402 401 CDD RRM1_SECp43_like 72 152 - -
Accr1g01402 401 CDD RRM2_SECp43_like 163 242 - -
Accr1g01402 401 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 61 354 - -
Accr1g01402 401 MobiDBLite consensus disorder prediction 12 30 - -
Accr1g01402 401 SUPERFAMILY RNA-binding domain, RBD 254 367 IPR035979 GO:0003676
Accr1g01402 401 Gene3D - 8 160 IPR012677 -
Accr1g01402 401 MobiDBLite consensus disorder prediction 1 66 - -
Accr1g01402 401 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 71 151 IPR000504 GO:0003723
Accr1g01402 401 SMART rrm1_1 270 337 IPR000504 GO:0003723
Accr1g01402 401 SMART rrm1_1 72 147 IPR000504 GO:0003723
Accr1g01402 401 SMART rrm1_1 165 239 IPR000504 GO:0003723
Accr1g01402 401 MobiDBLite consensus disorder prediction 380 401 - -
Accr1g01402 401 MobiDBLite consensus disorder prediction 31 53 - -
Accr1g01402 401 FunFam Polyadenylate-binding protein RBP45C 248 351 - -
Accr1g01402 401 Gene3D - 163 239 IPR012677 -
Accr1g01402 401 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 166 229 IPR000504 GO:0003723
Accr1g01402 401 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 271 334 IPR000504 GO:0003723
Accr1g01402 401 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 73 138 IPR000504 GO:0003723
Accr1g01402 401 SUPERFAMILY RNA-binding domain, RBD 38 152 IPR035979 GO:0003676
Accr1g01402 401 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 269 341 IPR000504 GO:0003723
Accr1g01402 401 FunFam Polyadenylate-binding protein RBP45C 156 247 - -
Accr1g01402 401 SUPERFAMILY RNA-binding domain, RBD 148 257 IPR035979 GO:0003676
Accr1g01402 401 Gene3D - 245 350 IPR012677 -
Accr1g01402 401 MobiDBLite consensus disorder prediction 243 269 - -
Accr1g01402 401 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 164 243 IPR000504 GO:0003723
Accr1g01402 401 MobiDBLite consensus disorder prediction 240 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g01402 Accr-Chr1 41609652 41613478 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g01402 165 334 Eukaryotic Initiation Factors Gene Family AT4G34110 28.571 4.69e-14 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g01402 - - aprc:113864230 591.267