Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g01401 ATGATGCAGCCTGGACCTGGCATGGCTCCCCCAAACATGGGTCAACAACCCAACCAACAATACCAGCAGCAGCAACCCTACATGATGATGCCACCGCAGGCTCAGGCGCCGCCTATGTGGGCTCCTTCTGCCCAGCCCCCGCCGCCGCAGCAGGCCGTTGCTCCGATGCAATCCACCCAACATGGCCAGCCTAGCAGCGCCGATGAGGTCCGTACCCTTTGGATCGGCGATTTGCAGTACTGGATGGATGAGAACTACCTGTATAATTGTTTTGCGCATACAGGCGAGGTAAATGTTGGTTCTGTGAAAGTCATTCGTAATAAGCAAACTAATGTATCTGAAGGTTATGGGTTTATTGAGTTTTATACTCGTGCTGCCGCAGAGAGAGTTCTTCAAACATTTAATGGCACAATTATGCCTAATGGTGGGCAAAACTATAGATTGAATTGGGCAACTTTTAGTGCTGGTGATAGACGTCATGATGATAGTCCAGATTACACTATTTTTGTCGGAGACTTGGCTGCCGATGTTACAGATTACCTGCTGCAGGAGACGTTTCGGGCTAGATATCCCACAGTTAAGGGTGCAAAGGTTGTAATTGATAGGCTGACTGGGAGGACGAAGGGTTATGGTTTTGTCAAGTTTGGAGATGAGAATGAACAGATTCAAGCTATGACTGAGATGCAAGGGGTTCTTTGCTCAACAAGACCCATGCGAATTGGACCAGCCACAAACAAAAATGTTGGAGGACAGCAAAAAGCTTCCTATCAGAATCCTCAAGGTTCACAGAACGAGAATGATCCAAATAATACAACTATTTTCGTCGGCAATTTGGATCCTAATGTCACTGATGATCATTTGAGGCAAGTTTTTGGTAATTATGGAGAATTAATACATGTGAAGATTCCAGCAGGCAAGAGATGTGGATTTGTCCAATTCGCCGATAGGAGTTGTGCTGAAGAGGCTCTGCGGATTCTAAATGGAACACAGTTGGGCGGTCAAAGTGTCCGACTTTCATGGGGCCGGAGTCCTTCAAACAAGCAGATCCAAGTCAGTACGGGGGATATTATGGGTATGCTCAAGGGTACGAGAATTATGGATACCCTCCTGCTGCTACACAGGACCCCAACATGTATGGAAGTTATCCAGGCTATGCTAACTACCAACCACCACAGCAACAACAGCAAATGGGGTATAGCTAAGCTATAA 1209 0.4682 MMQPGPGMAPPNMGQQPNQQYQQQQPYMMMPPQAQAPPMWAPSAQPPPPQQAVAPMQSTQHGQPSSADEVRTLWIGDLQYWMDENYLYNCFAHTGEVNVGSVKVIRNKQTNVSEGYGFIEFYTRAAAERVLQTFNGTIMPNGGQNYRLNWATFSAGDRRHDDSPDYTIFVGDLAADVTDYLLQETFRARYPTVKGAKVVIDRLTGRTKGYGFVKFGDENEQIQAMTEMQGVLCSTRPMRIGPATNKNVGGQQKASYQNPQGSQNENDPNNTTIFVGNLDPNVTDDHLRQVFGNYGELIHVKIPAGKRCGFVQFADRSCAEEALRILNGTQLGGQSVRLSWGRSPSNKQIQVSTGDIMGMLKGTRIMDTLLLLHRTPTCMEVIQAMLTTNHHSNNSKWGIAKL 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g01401 402 FunFam Polyadenylate-binding protein RBP45C 250 353 - -
Accr1g01401 402 Gene3D - 8 161 IPR012677 -
Accr1g01401 402 SUPERFAMILY RNA-binding domain, RBD 256 349 IPR035979 GO:0003676
Accr1g01401 402 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 61 347 - -
Accr1g01401 402 MobiDBLite consensus disorder prediction 12 30 - -
Accr1g01401 402 SUPERFAMILY RNA-binding domain, RBD 38 154 IPR035979 GO:0003676
Accr1g01401 402 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 271 343 IPR000504 GO:0003723
Accr1g01401 402 FunFam Polyadenylate-binding protein RBP45C 158 249 - -
Accr1g01401 402 CDD RRM1_SECp43_like 72 154 - -
Accr1g01401 402 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 166 245 IPR000504 GO:0003723
Accr1g01401 402 MobiDBLite consensus disorder prediction 31 53 - -
Accr1g01401 402 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 73 140 IPR000504 GO:0003723
Accr1g01401 402 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 273 336 IPR000504 GO:0003723
Accr1g01401 402 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 168 231 IPR000504 GO:0003723
Accr1g01401 402 Gene3D - 247 353 IPR012677 -
Accr1g01401 402 SUPERFAMILY RNA-binding domain, RBD 150 257 IPR035979 GO:0003676
Accr1g01401 402 Gene3D - 165 241 IPR012677 -
Accr1g01401 402 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 71 153 IPR000504 GO:0003723
Accr1g01401 402 MobiDBLite consensus disorder prediction 1 65 - -
Accr1g01401 402 CDD RRM2_SECp43_like 165 244 - -
Accr1g01401 402 SMART rrm1_1 272 339 IPR000504 GO:0003723
Accr1g01401 402 SMART rrm1_1 72 149 IPR000504 GO:0003723
Accr1g01401 402 SMART rrm1_1 167 241 IPR000504 GO:0003723
Accr1g01401 402 MobiDBLite consensus disorder prediction 239 270 - -
Accr1g01401 402 FunFam Polyadenylate-binding protein RBP45 10 157 - -
Accr1g01401 402 MobiDBLite consensus disorder prediction 245 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g01401 Accr-Chr1 41609645 41613478 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g01401 72 351 Eukaryotic Initiation Factors Gene Family AT4G34110 27.018 1.51e-25 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g01401 - - gmx:100796848 532.332