Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g01373 ATGAGTTCGTCATTCATCATAGCTATATATTTACTATGTCTTGCATCAACGTTGACACTCATACATGGAGTATCAAGGGAAGTAGCTTCAAACCCAGAAGTTGTGAATATTGGAGCTATTGTAACATTTAAAACTATAAATGGACGAGTTTCTAAAGTTGCCATCAAAGCCGCAGAGAAAGATGTGAATTCTGATCCACGCATCCTTGGTGGACGCAAATTGTCCATAACCCTGCATGATGCCAACTTCAATGGTTTTCTTAGCTTCATTGGAGCACTCAAGTTCTTGGGGAGAGACTCAGTTGCTATTATCGGTCCACAAACTTCAACAATGGCCCCTGTGCTCTCACATTTGTCAAACGAACTCCATGTTCCCATTCTGTCGTTTACAGCTCTGGATCCTACCCTATCACCTCTGCAGTACCCATATTTTCTGCAAACAGCACCCAACGATCGATTCCAGATGACTGCAGTGGCCGACATTGTTAGCTATTTCGGTTGGAAAGAGATTGTTGCTGTTTATACTGATGATGATCAAAGTAGAAATGGTATCGCTGTATTGGGAGACAAACTTGCTGAGAAGCGCTGTAGGATATCTTACAAAGCAACACTGCCCCCTGATCCATCTGCTAGTCGAAATGATGTTATTATTCAGTTGACCAAGGTTCAAAGTATGGAGTCCAGAGTGATTGTTCTTCACACCTTCGCCCAGACAGGTCGCTTGGTTTTTGATGTGGCTCAGGAATTAGGAATGATGAGTGAAGGTTATGTCTGGATAGCTTCTTCGTGGTTATCAACTGTTTTAGACTCAAATTCACCACTTCATTTGAATGCTTCTTACTCAATCCAAGGAGTTCTTACGCTTCGCCCTCACACACCGCAATCAAAAAGAAAACAGGCCTTTATGTCCAGGTGGAACCAGATAAGTAATGGTTCAATTGGGTTGAATCCGTATGGACTCTATGCTTATGATACTGTTTGGATCATTGCCCTTGCATTGAAATCATTTTTTGATCAGAATGGCAATCTTTCATTCTCTAACAATACAAATTTAAACAGAATGAGAGGGGAGACTCTGGATCTTGGTGCCCTGAGCGTTTTCAATGGAGGGAGACAATTGCTTGATAACATACTGCGCATTAACATGACTGGATTGACAGGACCTATTCAATTTCATCCAGATAGATCCCCCTTAAATCCATCATATGACATCCTAAATGTAATTAATAGTAGTTATTATAGGAAAGTCGGGTACTGGTCTAATTATTCAGGGCTATCTGTTATTCCTCCTGAGAAACTTCACACTAAGCCAGCCAACCGATCAATTTTAAACCAACATTTGTCCAATATAACTTGGCCTGGTGATACAACTGAAAAGCCTCGGGGATGGGTTTTTCCAAATAATGGAAGACAGCTAAGAATTGCTGTCCCCAATCGAGTTAGTTATCAGAACTTGGTCTCACAAATAAATGGTACCAATAGAGTGCAAGGATACTGCATCGATGTCTTCCTGGCTGCCATTAAATTGCTGCCATATGCAGTTCCGTACAAGTTTGTTCTGTTCGGAGATGGACGTGAGAACCCCAACTACTTTGAACTTATCAATGAGATTAATTCTGATGTTTTTGATGGTGCTGTAGGCGACATTGCCATTGTTACTGACCGAACAAGGATTGTGGATTTTACTCAACCATATACAGAGTCAGGCCTTGTTGTGGTTACAAAAGTAAAAGAATTAAAGTCAAGTGCTTGGAATTTCTTGCGACCTTTTACTCCATTAATGTGGGGAGTCACCGCTGTTTTCTTCCTCATTGTTGGAGCAGTTGTGTGGATTCTTGAACATAGAACAAATGATGAGTTCCGAGGGCCTCCTAGGAAGCAAATTGTTACAATTCTTTGGTTTAGCCTCTCCACCATGTTTTTTGCACACAGAGAGAACACAGTTAGTGCACTTGGTCGTATAGTACTAATCATCTGGCTTTTCGTGGTTTTGGTAATCAATTCAAGCTATACTGCAAGCCTAACATCAATCCTTACTGTGCAACAACTTTCCTCAACAATAACAGGAATTGATAGCTTGATAACCAGTAATGAACGTATAGGATATCAAGTAGGATCATTTGCTGAAAACTATCTTTCTCAGGAACTCAACGTCCCAAAATATAGACTTGTTCCTCTTGGATCACCAGAAGAATATGCCATTGCTCTTGAGAAGGGAACTGTCGCGGCTGTTGTTGATGAACGGCCATATGTAGAACTCTTCATGTCAAATTACTGCAAATTCTCCATTAGAGGCCAAGAATTCACCAAAAGTGGATGGGGATTTGCCTTCCCAAAGGACTCTCCTTTATCCATTGATATGTCCACTGCCATACTGACTCTGTCTGAAAATGGTGAGCTCCATAAGATTCATGAGAGGTGGCTCTCAACACAGGCTTGTGCATTTAAGAATGCAGAGGAGGGATCTGATCAACTTCAGTTAGAAAGCTTTTGGGGCCTGTTTCTGTTATGTGGGATAGTAAGTTTTGTAGCGCTTCTTGTCTATTTCATCATGATGGTTCTCCAATTCTTCCGTGACTTCCCCAACAATGACGATCCTTCTAACGGTAGCAGCTCGCGCTCTGCGCGCATCCAGACATTTCTAAGTTTTGCTGATGAAAAAGAAGACATGTCACAAAGAAAGCTTAAAAGAAAACGCAAGGATATTTCGCAGAAAGCATAG 2721 0.4131 MSSSFIIAIYLLCLASTLTLIHGVSREVASNPEVVNIGAIVTFKTINGRVSKVAIKAAEKDVNSDPRILGGRKLSITLHDANFNGFLSFIGALKFLGRDSVAIIGPQTSTMAPVLSHLSNELHVPILSFTALDPTLSPLQYPYFLQTAPNDRFQMTAVADIVSYFGWKEIVAVYTDDDQSRNGIAVLGDKLAEKRCRISYKATLPPDPSASRNDVIIQLTKVQSMESRVIVLHTFAQTGRLVFDVAQELGMMSEGYVWIASSWLSTVLDSNSPLHLNASYSIQGVLTLRPHTPQSKRKQAFMSRWNQISNGSIGLNPYGLYAYDTVWIIALALKSFFDQNGNLSFSNNTNLNRMRGETLDLGALSVFNGGRQLLDNILRINMTGLTGPIQFHPDRSPLNPSYDILNVINSSYYRKVGYWSNYSGLSVIPPEKLHTKPANRSILNQHLSNITWPGDTTEKPRGWVFPNNGRQLRIAVPNRVSYQNLVSQINGTNRVQGYCIDVFLAAIKLLPYAVPYKFVLFGDGRENPNYFELINEINSDVFDGAVGDIAIVTDRTRIVDFTQPYTESGLVVVTKVKELKSSAWNFLRPFTPLMWGVTAVFFLIVGAVVWILEHRTNDEFRGPPRKQIVTILWFSLSTMFFAHRENTVSALGRIVLIIWLFVVLVINSSYTASLTSILTVQQLSSTITGIDSLITSNERIGYQVGSFAENYLSQELNVPKYRLVPLGSPEEYAIALEKGTVAAVVDERPYVELFMSNYCKFSIRGQEFTKSGWGFAFPKDSPLSIDMSTAILTLSENGELHKIHERWLSTQACAFKNAEEGSDQLQLESFWGLFLLCGIVSFVALLVYFIMMVLQFFRDFPNNDDPSNGSSSRSARIQTFLSFADEKEDMSQRKLKRKRKDISQKA 906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g01373 906 Pfam Ligand-gated ion channel 810 839 IPR001320 GO:0015276|GO:0016020
Accr1g01373 906 Gene3D - 772 807 - -
Accr1g01373 906 SUPERFAMILY Periplasmic binding protein-like I 30 464 IPR028082 -
Accr1g01373 906 PIRSF IGluLR_plant 3 906 IPR017103 -
Accr1g01373 906 FunFam Glutamate receptor 467 583 - -
Accr1g01373 906 FunFam Glutamate receptor 709 812 - -
Accr1g01373 906 Gene3D - 583 715 - -
Accr1g01373 906 CDD PBP1_GABAb_receptor_plant 36 429 IPR044440 -
Accr1g01373 906 SMART AABind_6 471 811 IPR001638 -
Accr1g01373 906 FunFam Glutamate receptor 583 713 - -
Accr1g01373 906 MobiDBLite consensus disorder prediction 885 906 - -
Accr1g01373 906 CDD GluR_Plant 470 808 - -
Accr1g01373 906 SMART GluR_14 473 810 IPR001320 GO:0015276|GO:0016020
Accr1g01373 906 Gene3D - 739 771 - -
Accr1g01373 906 Gene3D - 467 582 - -
Accr1g01373 906 Gene3D - 53 399 - -
Accr1g01373 906 Pfam Bacterial extracellular solute-binding proteins, family 3 491 809 IPR001638 -
Accr1g01373 906 FunFam Glutamate receptor 150 309 - -
Accr1g01373 906 Pfam Receptor family ligand binding region 53 408 IPR001828 -
Accr1g01373 906 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 35 873 IPR015683 -
Accr1g01373 906 SUPERFAMILY Periplasmic binding protein-like II 450 809 - -
Accr1g01373 906 Gene3D - 150 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g01373 Accr-Chr1 40995481 40999697 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g01373 29 901 Ion Channels AT2G17260 61.268 0.0 1139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g01373 K05387 - qsu:112033130 1295.03