Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g01348 ATGGACTGGTCTAGGGGTACCACCGTTGGCCGGGGTGCCACCGCCACCGTCTCCATTGCCCATGATCGTCAGTCTGGTCGCTTGTTTGCGGTCAAATCAGCCGAGCTCAACCGGTCGGAGTTGCTTCAAAGGGAACAGAAAATTCTGTCCACATTGAAATCTCCTCACATAGTAGCATACCAAGGTCATGATATTACATTAGAGAGTAATGTACAGTGGTACAATCTGATCATGGAGTACGCACCTTACGGTACGCTCGCAGACTTGGCTCGCCGGCGAGACGGGCTAGAGGAGGCCGTGGTCCGAACCTATGCGCGCCAAATCTTGCTGGGGCTTGACCATCTTCATTCTAACGGCATAGTGCATGGTGATATTAAAGGTAAGAATGTTTTGGTGACAGAGGAAGGGGCTAAAATTGCAGACTTGGGTTGTGCTCGGAGGGTGTCTGAGGCCGTGGGCTACGGCGGAGGGATTGCCGGCACACCAGTGTTCATGGCGCCGGAGGTGGCGCGTGGAGAGCAACAGGGGTTCGCTGCAGACGTATGGTCTCTGGGGTGTACTGTATTGGAGATGATCACCGGGCGAGCTCCCTGGCCGGACGTATCTGACCCTTTAAGTGCGGTTTATCGAATCGGGTTTTCCGGCGATGTGCCGGAGATTCCCGGGTTTATGTCGGAGCAAGGGAGGGACTTTGTGAGCAAGTGTCTGAAGATAGACCCGAATGAGCGGTGGTCCGTGAGCGAATTTCTCAGACATGAGTTTGTGGAAGAATCAATTTCGTCCATGAAAGAATTTGGAAGCTCGAAGTCTGATACTCCAACGGGTGTAATGGATGGATCCATCTGGGATTCATGGGAACCCACCCAAGATCCGACCCGTATTCGCTCCTGCAATTCTGGCAGAGACAGGATTCGTAGGTTGTGCACAGAAGCCACGACGTCGTTGGACGGCAATGAGCCCAACTGGGAATGGGAAGGAGAGTGGATTACTGTGAGAAAGAGCAATGTGACAAAAGAGAATTACAATATTGACCTTGGAAATGAGACTAGTTTGGTGCGTTGTTATGAACCCAAAACAGTCATGGGTCTATGTAATTGTAATGTCAATTGTAAGGTTAATGGTTGTAACAAAGGATTATTGTTAGGTTATTATGATTGGTCATGTATAAGTATTATTGTTCGGGAAAGGAAGATTGAATCACAAAATAAGGAAATAATTGTTCATGATTTGCCTCTCTGTTCATCCCTATAG 1251 0.4924 MDWSRGTTVGRGATATVSIAHDRQSGRLFAVKSAELNRSELLQREQKILSTLKSPHIVAYQGHDITLESNVQWYNLIMEYAPYGTLADLARRRDGLEEAVVRTYARQILLGLDHLHSNGIVHGDIKGKNVLVTEEGAKIADLGCARRVSEAVGYGGGIAGTPVFMAPEVARGEQQGFAADVWSLGCTVLEMITGRAPWPDVSDPLSAVYRIGFSGDVPEIPGFMSEQGRDFVSKCLKIDPNERWSVSEFLRHEFVEESISSMKEFGSSKSDTPTGVMDGSIWDSWEPTQDPTRIRSCNSGRDRIRRLCTEATTSLDGNEPNWEWEGEWITVRKSNVTKENYNIDLGNETSLVRCYEPKTVMGLCNCNVNCKVNGCNKGLLLGYYDWSCISIIVRERKIESQNKEIIVHDLPLCSSL 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g01348 416 SMART serkin_6 3 255 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr1g01348 416 ProSitePatterns Serine/Threonine protein kinases active-site signature. 120 132 IPR008271 GO:0004672|GO:0006468
Accr1g01348 416 MobiDBLite consensus disorder prediction 264 283 - -
Accr1g01348 416 Gene3D Transferase(Phosphotransferase) domain 1 2 290 - -
Accr1g01348 416 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
Accr1g01348 416 ProSiteProfiles Protein kinase domain profile. 3 255 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr1g01348 416 Pfam Protein kinase domain 5 255 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr1g01348 416 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 336 - -
Accr1g01348 416 SUPERFAMILY Protein kinase-like (PK-like) 3 268 IPR011009 -
Accr1g01348 416 CDD STKc_MAPKKK 2 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g01348 Accr-Chr1 40371766 40373016 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g01348 2 332 MAP Kinase Kinase Kinase AT5G55090 46.307 1.94e-98 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Accr1g01348 Pkinase 2.7e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g01348 K20716 - qsa:O6P43_031265 419.853