LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr1g01345	ATGCTTCCTGGTTTGGGATTCCCAGTGAATCTTGGCCGTGTAATGGAATCTTCTGATAGTAATCGGAAGGTCCTCAGTGAGATTGATTTCTTCTCTAACCCAACAAGCAAGCCGTCAGCTCAAGAAATTCATCATCATCATCAAGATGTTAAAACCCTTTCCAGTAATATCTCTGTCAAGAAGGAAATTCCTCAGACTCAACCAGTTTCTAGGTGTAACTTGGATATGAATAATGGTTTACAACTGCATACTGGTAATACCAGGAGTGATCAATCTACGTTGGATGATCATGGCGTCTCGTCAGACGCTGACGATAAGCGAGCCAAAAGCAACGAGTTGAAACAACTGCAAGAAGAGGTTCAGAGAATGAACACAGAAAATCAGAACCTGAAAGAGATGCTGAGCCACATGAGCAATAACTACACCGCCCTGCAACTGCATCTTGCTGGATTAATCCAACAGCGACAACAACACAACCAACATGATCATCATGATCTTCAGGTTGTTGGAAAAAGTGAGGAGAAAAAACAGGTGACGGCGAGGCAGTTTATTGAGCTTGGATCAGGTGATGATGAAGTGTCCAATTCTAGTTCAGATGAAAGAACTCAATCTGCTTCACCTAATAATGATCAATCCACTACTACTGCAACAACAGAAGCCACCATGAGAAAAGCTCGTGTCTCAGTCCGTGCTAGATCAGAAGCCCCCATGATCAGTGATGGCTGTCAATGGAGAAAATATGGACAAAAAATGGCTAAAGGAAACCCATGTCCTCGCGCTTATTACAGATGCACCATGGCTGTTGGTTGTCCTGTTCGTAAACAAGTTCAGCGTTGTGCAGAAGACAAAACCATATTGGTAACAACGTACGAAGGAAATCATAACCATCCATTGCCTCCGGCGGCCATGGCGATGGCTTCAACGACAAGTGCAGCAGCGGGAATGTTACTGTCTGGTTCAATGTCAAGTCCGGAAGGGTTGATGAAGATGAACCCTATGTTAGCAAGAGCCATTCTTAACCCATCTTGTTCTTCCACCATGGCTACACTCTCTGCTTCAGCTCCTTTCCCTACTGTCACATTGGACCTAACTCACAACGTCAACAACGACAATAATATCAACAACGCAATGCTGCATCAGTTTCAAGTTCACCGCCCTAATACTACGCCGTTTCATCAGCTTGCTCAACCATTGTATAACCAGTCCAAGTTTTCTGGCCTTCAGTTGTCACAGGATAGGCCAGTTCATCAGCAGTCTTCTACTCCAGCTGACAACGTCGGTGACGCCGCCAAAGCCATCACCACGGACCCAAACTTCACGGCGGTTCTTGCAGCTGCTATCTCTTCCATCATCCGTGGTAATAATAATCAGAACAACAACAGTGCTAGCAGCAGCAATCCACATATCCTCAACAGTACTTCAATCAGCAGCTTTTCTGGGAATTAA	1446	0.4488	MLPGLGFPVNLGRVMESSDSNRKVLSEIDFFSNPTSKPSAQEIHHHHQDVKTLSSNISVKKEIPQTQPVSRCNLDMNNGLQLHTGNTRSDQSTLDDHGVSSDADDKRAKSNELKQLQEEVQRMNTENQNLKEMLSHMSNNYTALQLHLAGLIQQRQQHNQHDHHDLQVVGKSEEKKQVTARQFIELGSGDDEVSNSSSDERTQSASPNNDQSTTTATTEATMRKARVSVRARSEAPMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDKTILVTTYEGNHNHPLPPAAMAMASTTSAAAGMLLSGSMSSPEGLMKMNPMLARAILNPSCSSTMATLSASAPFPTVTLDLTHNVNNDNNINNAMLHQFQVHRPNTTPFHQLAQPLYNQSKFSGLQLSQDRPVHQQSSTPADNVGDAAKAITTDPNFTAVLAAAISSIIRGNNNQNNNSASSSNPHILNSTSISSFSGN	481

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr1g01345	481	MobiDBLite	consensus disorder prediction	189	222	-	-
	Accr1g01345	481	MobiDBLite	consensus disorder prediction	458	481	-	-
	Accr1g01345	481	MobiDBLite	consensus disorder prediction	157	180	-	-
	Accr1g01345	481	MobiDBLite	consensus disorder prediction	69	109	-	-
	Accr1g01345	481	Gene3D	WRKY domain	223	300	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Accr1g01345	481	Pfam	WRKY DNA -binding domain	240	297	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Accr1g01345	481	SUPERFAMILY	WRKY DNA-binding domain	231	299	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Accr1g01345	481	PANTHER	WRKY TRANSCRIPTION FACTOR 36-RELATED	78	464	IPR044810	GO:0003700
	Accr1g01345	481	ProSiteProfiles	WRKY domain profile.	233	299	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Accr1g01345	481	Coils	Coil	106	140	-	-
	Accr1g01345	481	MobiDBLite	consensus disorder prediction	69	94	-	-
	Accr1g01345	481	MobiDBLite	consensus disorder prediction	95	109	-	-
	Accr1g01345	481	MobiDBLite	consensus disorder prediction	155	232	-	-
	Accr1g01345	481	SMART	WRKY_cls	238	298	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Accr1g01345	481	FunFam	probable WRKY transcription factor 31	223	300	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr1g01345	Accr-Chr1	40327879	40330434	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr1g01345	7	458	WRKY Transcription Factor Family	AT1G62300	49.419	7.52e-133	394

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Accr1g01345		WRKY	3.9e-24	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr1g01345	-		-	gmx:100802124	453.366