Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g01340 ATGACCATAAAAGAAAGCACCAAATTATTAGTCTGTCTTTTGTTTCTAATTCTGATTCTCAGAGTCGAAGCTTGTATCACTGGTTGCAAGCTTGCTTTAGCTTCGTACTACGTCTGGGAAGGCGCAAATCTCACATACATAAGCGAAATATTCGACCAGGAATTTTCTGAGATTCTCAAATACAATCCAACAATCCCCAATCCGGATTTTGTTCGGAGCACAAGCCGAATCAACGTTCCGTTCACGTGCGATTGCTTGAACGGCGACTTCTTAGGGCACACTTTCATTTACAAAACCCAGCGCGGTGATACGTACCATATCATCGCTGAGCAGGCTTTTTCTAGCCTGACGACCGTGGATTGGTTGGAGAGGGTGAATCGGTATGGAGATATTGATATACCGGAAAACGTTGAGATTAACGTCACCGTCAATTGCTCGTGCGGCGATAGGCATGTGTCGAGGGATTATGGATTGTTTTTGACGTACCCACTCCGGAGCGGCGACAGCTTGTCGGAGCTAGCGGCGGCTTCCGGTGTACCAGCGGAGATCATACAGAGGTATAATCCAGCCTCTGATTTCAACGCGGGAAATGGACTGGTGTTTGTGCCGGCGAAAGGGATATCTGGGGGAGCCGTTGCTGGAATAAGTATTGGAGCAGTTTTTGGGGTTTTAGTATTGGCACTTGCTGTGTATGTTATTGTTTATAGAAGCAAGAAAAAAGTGGCTGAGGCTTCTCTTCCTCCTCCACGATCTCATGATCAGTATCTTCGGATTGGACGAGGTTCAGCAAGCAACTTGGAGAAGGCTTTAGAATCTATTGATGTGGCTTCTCCAAGGATGACAGGAATCACAGTAGAGAAGTCAGTAGAGTTCTCATTTGAGGAGCTTGCGAAAGCCACCAATGGCTTTTCTATTTCCAATAAGATCGGTCAAGGTGGCTTTGGAACTGTTTACTACGCAGAGCTTCGAGATGAGAAAGCTGCAGTTAAGAAGATGGATATGCAAGCTTCAAAAGAATTCCTTGCTGAACTCAAGTTTCTGACACATGTTCACCACTTGAACTTGGTACGCTTAATAGGGTATTGTATTGAGAGCTGTTTATTTTTGGTTTATGAGTACATTGAGAATGGAAATTTAGGCCAACATTTACGTGGTTCAGGAAGAGAACCACTTTCATGGCCAACCAGAGTTCAAATCGCCCTGGACGCAGCGAGGGGACTCGAATACATCCACGAGCATACAGTTCCTGTCTACATTCATCGCGACATTAAATCAGCCAACATTTTGATTGATAAGAACTTTCGTGCAAAGGTTGCAGATTTTGGTCTGACAAGACTTACTGAATATGGAAGTTCTTCACTTCATACACGACTTGTGGGTACATTTGGCTACATGCCCCCAGAATATGCGCAATACGGTGACGTTTCAGCTAAAGTAGACGTATATGCTTTCGGAGTAGTGCTATATGAACTCATATCTGCCAAGGAAGCCATCGTAAAGATAAAAGAGCCTGAGAACGAATCAAAAGGACTTGTTGCCTTGTTTGAAGAGGTTTTAGGGCAGCCAAACGAGGAAGAACATCTTCGTAAGCTTGTTGATCCTAGGCTTGGTGATAACTACCCTTTTGAATCGGTATATAAGATGATTCAACTTGCAAAAGCTTGCACACAAGAGAACGCACAAATAAGGCCAAGCATGAGATCCATTGTAGTTGCACTCATGACACTCTCTTCTTCAACTGAGGATTGGGATGTTGGCTCCTTTTATGAATCCCAAGCTATGCATCTCATTTCTGGAAGGTAG 1803 0.442 MTIKESTKLLVCLLFLILILRVEACITGCKLALASYYVWEGANLTYISEIFDQEFSEILKYNPTIPNPDFVRSTSRINVPFTCDCLNGDFLGHTFIYKTQRGDTYHIIAEQAFSSLTTVDWLERVNRYGDIDIPENVEINVTVNCSCGDRHVSRDYGLFLTYPLRSGDSLSELAAASGVPAEIIQRYNPASDFNAGNGLVFVPAKGISGGAVAGISIGAVFGVLVLALAVYVIVYRSKKKVAEASLPPPRSHDQYLRIGRGSASNLEKALESIDVASPRMTGITVEKSVEFSFEELAKATNGFSISNKIGQGGFGTVYYAELRDEKAAVKKMDMQASKEFLAELKFLTHVHHLNLVRLIGYCIESCLFLVYEYIENGNLGQHLRGSGREPLSWPTRVQIALDAARGLEYIHEHTVPVYIHRDIKSANILIDKNFRAKVADFGLTRLTEYGSSSLHTRLVGTFGYMPPEYAQYGDVSAKVDVYAFGVVLYELISAKEAIVKIKEPENESKGLVALFEEVLGQPNEEEHLRKLVDPRLGDNYPFESVYKMIQLAKACTQENAQIRPSMRSIVVALMTLSSSTEDWDVGSFYESQAMHLISGR 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g01340 600 ProSitePatterns Serine/Threonine protein kinases active-site signature. 418 430 IPR008271 GO:0004672|GO:0006468
Accr1g01340 600 CDD STKc_IRAK 309 570 - -
Accr1g01340 600 Pfam Protein tyrosine and serine/threonine kinase 305 572 IPR001245 GO:0004672|GO:0006468
Accr1g01340 600 Gene3D Transferase(Phosphotransferase) domain 1 374 591 - -
Accr1g01340 600 FunFam PTI1-like tyrosine-protein kinase 3 374 587 - -
Accr1g01340 600 ProSiteProfiles Protein kinase domain profile. 303 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr1g01340 600 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 9 587 IPR044812 GO:0019199|GO:0045087
Accr1g01340 600 SUPERFAMILY Protein kinase-like (PK-like) 282 573 IPR011009 -
Accr1g01340 600 ProSitePatterns Protein kinases ATP-binding region signature. 309 331 IPR017441 GO:0005524
Accr1g01340 600 Gene3D Phosphorylase Kinase; domain 1 284 373 - -
Accr1g01340 600 FunFam LysM receptor kinase 2 282 373 - -
Accr1g01340 600 SMART serkin_6 303 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g01340 Accr-Chr1 40239907 40248763 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g01340 1 600 Receptor kinase-like Gene Family AT3G21630 56.180 0.0 680
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Accr1g01340 PK_Tyr_Ser-Thr 2.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g01340 - K13429 gmx:100802308 840.106