Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g01327 ATGGAAGGTGGTTCTAATGGGACTTCAAGTGTGATGGGTTTTGGGGATAACAGTAATAACAATAGTAGTGGTGGTGGTGGGGGGTTGTGTGCTTCATCTCATCCAATGATGATGATGATGCCTTTTGTGACTACTTGTCATAATGTTTCCCATCAAATTCCATTCACTCCTAATCCTATGAATATTAATGCTCCTCCCTCACACACTACTACGCCTTTTCTTCTTCCTCCTTGCACCAATACTTCTTCTACTTCTAATCATCAACCCCAGAACAACAACAGCAGCAGCAGTTGCGGGTTAGTCTCCTTTCTCATGGAAGCCAACAACAACAACGCTGGCTCTTCTTCTTCTTCTGCTGCTGCTAAAGCAAAGATCATGGCTCATCCTCACTATCATCGTCTTTTGTCTGCCTACGTTAATTGTCAAAAGGTTGGAGCGCCTCCGGAAGCGGTGGCGAGGTTGGAGGAAGCATGTGCGTCTGCATTGACAATGACCGGCGGCGGCGGAGTGTCGGGGTGTATCGGAGAAGATCCGGCACTGGATCAGTTTATGGAGGCTTATTGTGAGATGCTGACCAAATATGAGCAAGAGCTCTCTAAACCCTTCAGGGAAGCTATGCACTTCCTTCACACCATCGAGTCTCAGTTCAAATCTCTCACTATTTCTTCTTCTTCGGACTTCGCTTGTGGTGAGGGTAGTGATCGGAATGGATCATCGGAAGAGGACATGGATGTGCCGAAGAGTCTGATCGATCCACTGGCGGACGATCAAGAATTGAAGGGGCAACTTCTTCGCAAGTACAGCGGATACCTGGGCAGCCTGAAGCAGGAGTTCATGAAGAAGAGGAAGAAAGGGAAGCTCCCTAAAGAAGCAAGGCAACAGCTTCTTGATTGGTGGAGCAGGCACTACAAATGGCCTTACCCATCAGAGTCGCAGAAGCTGCAACTGGCAGAATCAACAGGATTGGATCAGAAGCAAATAAACAACTGGTTCATTAATCAAAGGAAGCGTCATTGGAAACCATCGGAGGATATGCAATTCATGGTGGTGGATCCTTCTCATCCTCATCACCAGTATTACATGGACACTGTTCTTGGCAATCCCTATCCAATGATCTAG 1119 0.471 MEGGSNGTSSVMGFGDNSNNNSSGGGGGLCASSHPMMMMMPFVTTCHNVSHQIPFTPNPMNINAPPSHTTTPFLLPPCTNTSSTSNHQPQNNNSSSSCGLVSFLMEANNNNAGSSSSSAAAKAKIMAHPHYHRLLSAYVNCQKVGAPPEAVARLEEACASALTMTGGGGVSGCIGEDPALDQFMEAYCEMLTKYEQELSKPFREAMHFLHTIESQFKSLTISSSSDFACGEGSDRNGSSEEDMDVPKSLIDPLADDQELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLDWWSRHYKWPYPSESQKLQLAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVVDPSHPHHQYYMDTVLGNPYPMI 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g01327 372 Pfam KNOX1 domain 122 159 IPR005540 GO:0003677|GO:0005634
Accr1g01327 372 ProSiteProfiles 'Homeobox' domain profile. 278 341 IPR001356 GO:0003677
Accr1g01327 372 SUPERFAMILY Homeodomain-like 280 356 IPR009057 -
Accr1g01327 372 SMART HOX_1 280 345 IPR001356 GO:0003677
Accr1g01327 372 SMART KNOX1_2 119 163 IPR005540 GO:0003677|GO:0005634
Accr1g01327 372 Pfam KNOX2 domain 173 220 IPR005541 GO:0003677|GO:0005634
Accr1g01327 372 FunFam Homeobox protein knotted-1-like 2 283 345 - -
Accr1g01327 372 ProSitePatterns 'Homeobox' domain signature. 316 339 IPR017970 GO:0000981|GO:0006355
Accr1g01327 372 MobiDBLite consensus disorder prediction 67 94 - -
Accr1g01327 372 Gene3D - 276 348 - -
Accr1g01327 372 MobiDBLite consensus disorder prediction 1 26 - -
Accr1g01327 372 Pfam ELK domain 258 279 IPR005539 GO:0003677
Accr1g01327 372 Pfam Homeobox KN domain 298 337 IPR008422 GO:0003677|GO:0006355
Accr1g01327 372 CDD homeodomain 290 342 IPR001356 GO:0003677
Accr1g01327 372 SMART ELK_2 258 279 IPR005539 GO:0003677
Accr1g01327 372 SMART KNOX2_2 170 221 IPR005541 GO:0003677|GO:0005634
Accr1g01327 372 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 84 347 - -
Accr1g01327 372 ProSiteProfiles ELK domain profile. 258 278 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g01327 Accr-Chr1 40037619 40042562 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g01327 121 371 Homeobox Transcription Factor Family AT1G62360 78.431 5.79e-128 371
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Accr1g01327 KNOX2 2e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g01327 - - qsa:O6P43_031286 473.396