Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Accr1g01231 | ATGTACAGCAACTTTAAGGAGCAAGCGATAGAATACGTTAAACAAGCTGTGCAGGAAGACAATGCTGGGAATTATGCAAAAGCGTTTCCTTTGTATATGAATGCTTTAGAGTACTTCAAGACCCATTTGAAGTATGAGAAAAACCCTAAGATTAAAGAAGCGATTACCCAGAAATTCACCGAGTATCTGCGGCGGGCAGAGGAGATCCGGGCTGTTCTTGATGATGGAGGGCCTGGCCCGGCGTCCAATGGGGATGCTGCAGTAGCTACGCGGCCCAAGTCAAAGCCGAAGGACGGGGAAGGTGATGGGGAAGATCCAGAGCAGTCCAAGCTTAGGGCTGGGCTGAATTCAGCGATCATTCGGGAGAAACCTAATGTGAAGTGGAATGACGTTGCTGGGTTGGAGAGCGCGAAGCAAGCACTGCAGGAGGCGGTTATCTTGCCCGTCAAGTTCCCACAATTCTTTACTGGCAAAAGACGGCCTTGGAGAGCATTTTTGTTGTATGGCCCACCTGGTACAGGGAAATCATACTTGGCTAAGGCTGTTGCGACTGAAGCCGACTCCACATTTTTCAGTATTTCTTCATCGGACCTGGTTTCAAAGTGGATGGGTGAAAGTGAAAAGCTGGTATCAAACCTTTTCCAAATGGCCCGCGAAAGTGCCCCTTCCATCATATTTATTGATGAAATAGATTCTCTATGCGGGCAGCGCGGTGAAGGCAATGAGAGTGAAGCTTCTAGACGAATCAAAACTGAACTTCTAGTGCAGATGCAGGCGATAAGGCGGCGTTTTGATAAGCGTATATACATTCCACTACCAGATTTAAAGGCTCGTCAACACATGTTTAAGGTGCATTTAGGAGATACTCCTCATAACTTGAGTGAGAGTGATTTTGAGCACTTGGCTCGCAGGACAGAGGGGTTTTCAGGTTCAGATGTTTCTGTTTGTGTCAAGGATGTTTTATTTGAGCCTGTTCGTAAAACGCAAGATGCCATGTTTTTCTTTAAGAATCCCGACGGTATGTGGGTCCCTTGTGGACCAAAGCAAGAGGGTGCAGTTCAGGTCACAATGCAGGATCTTGCTGCCAAAGGAATCGCTTCCAAGATCCTTCCACCACCAATTACGAGAACAGATTTTGACAAGGTGCTTGCAAGACAAAGGCCTACTGTAAGCAAAGCTGACCTTGAAGTTCATGAGAGATTCACGAAAGAATTTGGAGAGGAGGGTTGA | 1230 | 0.4683 | MYSNFKEQAIEYVKQAVQEDNAGNYAKAFPLYMNALEYFKTHLKYEKNPKIKEAITQKFTEYLRRAEEIRAVLDDGGPGPASNGDAAVATRPKSKPKDGEGDGEDPEQSKLRAGLNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSNLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLSESDFEHLARRTEGFSGSDVSVCVKDVLFEPVRKTQDAMFFFKNPDGMWVPCGPKQEGAVQVTMQDLAAKGIASKILPPPITRTDFDKVLARQRPTVSKADLEVHERFTKEFGEEG | 409 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Accr1g01231 | 409 | FunFam | vacuolar protein sorting-associated protein 4A | 274 | 389 | - | - | |
| Accr1g01231 | 409 | SUPERFAMILY | MIT domain | 2 | 81 | IPR036181 | - | |
| Accr1g01231 | 409 | Pfam | MIT (microtubule interacting and transport) domain | 7 | 70 | IPR007330 | - | |
| Accr1g01231 | 409 | Gene3D | - | 6 | 75 | - | - | |
| Accr1g01231 | 409 | FunFam | Katanin p60 ATPase-containing subunit A-like 2 | 123 | 239 | - | - | |
| Accr1g01231 | 409 | SMART | AAA_5 | 161 | 274 | IPR003593 | GO:0016887 | |
| Accr1g01231 | 409 | Gene3D | - | 260 | 397 | IPR027417 | - | |
| Accr1g01231 | 409 | Gene3D | - | 124 | 259 | IPR027417 | - | |
| Accr1g01231 | 409 | SMART | smart | 2 | 79 | IPR007330 | - | |
| Accr1g01231 | 409 | MobiDBLite | consensus disorder prediction | 73 | 110 | - | - | |
| Accr1g01231 | 409 | Pfam | ATPase family associated with various cellular activities (AAA) | 166 | 263 | IPR003959 | GO:0005524|GO:0016887 | |
| Accr1g01231 | 409 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 124 | 405 | IPR027417 | - | |
| Accr1g01231 | 409 | Pfam | Vps4 C terminal oligomerisation domain | 342 | 406 | IPR015415 | - | |
| Accr1g01231 | 409 | CDD | MIT_VPS4 | 4 | 77 | IPR045253 | - | |
| Accr1g01231 | 409 | PANTHER | AAA DOMAIN-CONTAINING | 16 | 259 | - | - | |
| Accr1g01231 | 409 | MobiDBLite | consensus disorder prediction | 91 | 109 | - | - | |
| Accr1g01231 | 409 | FunFam | Suppressor of K+ transport growth defect 1 | 6 | 75 | - | - | |
| Accr1g01231 | 409 | Gene3D | - | 274 | 389 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Accr1g01231 | Accr-Chr1 | 35809637 | 35813288 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Accr1g01231 | 160 | 330 | Calmodulin-binding Proteins | AT3G56690 | 32.308 | 3.89e-27 | 112 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Accr1g01231 | K12196 | - | qsa:O6P43_028513 | 781.556 |