Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g01227 ATGGATTTGGGGGAATATTACAAGAGTGAAGAAGACAAGAGTATGAACTTTGAAGCTCCAACTTTCTTTGAATGGCTCAAACCTACTCCTTCATCTTCTGTGATTCATGATCATCATCAAGAGGCTATTCAGTTTTTGCCAATTGTAACTGAAAAGCCGTCAATTGAACATAGTACTGTAGGAGCAATTAAACAAGAGAAGAAGGACAACGTAGATGAGCAAGTGACTGTGGCTTTGCACATAGGATTACCTAATTACACACGAGGTTTTGAGGCTGATGGTGATCAGAAGAATAACAAGAAAGATTCTGATTTGAAGGAGGAAGAAGAAGAAGTGGTGAATAAGAGAAACTTTCAAGGGTTCTCAAAGAATTCAAACACAGAGAGAAGATTCTGGATACCAACTCCAGCACAGATCCTTGTTGGGCCGATGCAGTTTACTTGCTCCATATGCAGCAAGACCTTCAATAGGTATAATAACTTGCAGATGCATATGTGGGGTCATGGATCAGAGTATAGAAAAGGAGCAGAATCGCTGAGAGGAACACAACCAGCAGCAATGTTGAGGCTGCCATGTTATTGTTGTGCACAAGGCTGCAAGAACAATATCAACCATCCAAGAGGGAAGCCTCTTAAGGACTTCAGAACCCTCCAAACCCACTTCAAGAGGAAGCATGGTTCTAAGCCTTTTGTCTGCAGAAAATGTGCCAAAACCTTCGCCGTTAAAGGAGATTGGAGGACTCACGAGAAGAACTGTGGCAAGGTCTGGTATTGCACTTGTGGTTCTGATTTCAAGCACAAGAGATCTCTCAAAGATCATATCAGATCCTTTGGAAAAGGTCACTCCCCTCTTTCTCATCAACATCATCATGATGATGGCCACAAGCAATATGATTCCATCACTAGTACCACTGCCTCTCAAGAATCTTAA 930 0.4194 MDLGEYYKSEEDKSMNFEAPTFFEWLKPTPSSSVIHDHHQEAIQFLPIVTEKPSIEHSTVGAIKQEKKDNVDEQVTVALHIGLPNYTRGFEADGDQKNNKKDSDLKEEEEEVVNKRNFQGFSKNSNTERRFWIPTPAQILVGPMQFTCSICSKTFNRYNNLQMHMWGHGSEYRKGAESLRGTQPAAMLRLPCYCCAQGCKNNINHPRGKPLKDFRTLQTHFKRKHGSKPFVCRKCAKTFAVKGDWRTHEKNCGKVWYCTCGSDFKHKRSLKDHIRSFGKGHSPLSHQHHHDDGHKQYDSITSTTASQES 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g01227 309 PANTHER ZINC FINGER PROTEIN WIP2 33 299 IPR043584 GO:0003700|GO:0010468
Accr1g01227 309 MobiDBLite consensus disorder prediction 275 309 - -
Accr1g01227 309 FunFam Zinc finger protein WIP2 199 281 - -
Accr1g01227 309 SMART c2h2final6 146 168 IPR013087 -
Accr1g01227 309 SMART c2h2final6 230 250 IPR013087 -
Accr1g01227 309 SMART c2h2final6 193 225 IPR013087 -
Accr1g01227 309 MobiDBLite consensus disorder prediction 275 297 - -
Accr1g01227 309 MobiDBLite consensus disorder prediction 93 112 - -
Accr1g01227 309 SUPERFAMILY beta-beta-alpha zinc fingers 216 250 IPR036236 -
Accr1g01227 309 Gene3D Classic Zinc Finger 145 168 - -
Accr1g01227 309 Pfam Zinc finger, C2H2 type 146 165 IPR013087 -
Accr1g01227 309 MobiDBLite consensus disorder prediction 88 112 - -
Accr1g01227 309 ProSiteProfiles Zinc finger C2H2 type domain profile. 146 173 IPR013087 -
Accr1g01227 309 ProSitePatterns Zinc finger C2H2 type domain signature. 148 168 IPR013087 -
Accr1g01227 309 Gene3D Classic Zinc Finger 188 279 - -
Accr1g01227 309 SUPERFAMILY beta-beta-alpha zinc fingers 138 169 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g01227 Accr-Chr1 35791285 35793310 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g01227 9 283 C2H2 Transcription Factor Family AT1G08290 57.143 3.43e-120 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Accr1g01227 zf-C2H2_6 3.1e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g01227 - - gmx:100788451 404.831