Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g01136 ATGGTTCTCTCCAACAAGAAGCTTAAACAGAAGCTTAGAGCGGAGTTAGCTCAATCTGAGTCCGCAAATCCAGATTGTTCTTTCAAAACTCTTCTTGACTCTGCCACCCCGAATATCCTATTATCCAAGAGAGAGAAGCGCCGAAAGGTTCGCTCTTTGCAACAACCCGAGACTACACAAGAAGGTGGTGATGGTCGTAGCGTTGATGAGAGTAAAGAAGACGAAGGAGCACAGAAGAAGAGCAGAAAGAGGAAGAGGAAGGCTGAGGACAGCACTGTGGAAAATGGGACTGTGAAGGATGCGAAGAAATCGAAGAAGAAGAAACGTGATAAGAGGAAGAAGAAGAATAACAAAAAGGCCAAAACGGACCAGGAAAAGGATGCTAATCCTGGAGATGAGAAGCTAGAGGCTTCAGAGTTAACTAAGAGTAATGGCAGGGAGCAGAATGTTGATGTTCCTACAAAAGTGTATGTTGGAGGAATTCCATACTATTCAACTGAGGATGATATTCAAAGCTATTTCGAAGGCTGTGGCACAATTACTGAAATTGATTGCATGACATTTCCTGAGACTGGCAAGTTCAGAGGGATTGCCCTTATTAATTTTAAGACTGAAGCTGCTGCTAAACGAGCCTTGGCTCTTGATGGATCTGACATGGGAGGACTCTTCCTTAAAATCCAACCCTACAAAACGACGCGAACCGTTAAAGCGTCCGATTTTGCCCCGAAACCTGTGGAGGGCTACAACAGAATCTATGTTGGAAATTTGTCGTGGAACACAACAGAGGATCAATTAAGGAGTCTATTCTTGAGTTGTAGCATATCATCGATACGTTTAGGTATGGATAAGGAGACAGGAGAATTCCGAGGATATGCTCATGTGGATTTCACTGACAGTCAATCGGTGAAAGCAGCAGTTGCCTTGGACCAAAAGGTGATGCATGGGAGACCTGTTAGGATAACATGCGCAGTTCCTTTAAAGAAGCTATGGAAGCAAACAACAACCGATGTGCCTGCGCCTATGAACACCGAAGTTGATGGTGAGAAGCCAAGCTCCACTGGAACTGGCAAAGTGAAGAGGAGGACATGCTTTGAGTGCGGTGAAATGGGGCATATTTCTTCTGCATGCCCAAAGAAACAAACAAACGATGCGCCTGCGCCAATGAACACCCAAGTTAATAGTGAGAAGCCAAGCTCCACTGGAAGTGGCAAAGTGAAGAGGAGGACATGCTTTGAGTGTGGTGAAAAGGGGCATGTTTTTTCTGCTTGCCCAAAGAAACAAACAACCGATGTGCCTGTGCCTGTGCCTGCGCCAACGAACACCCAAGTTAATGGTGAGAAGCCAAGCTCCACTGGAAGTGGCAAAGTGAAGAGGAGGACATGCTTTGAGTGTGGTGAAAAGGGGCATATTTCTTCTGCATGCCCTAAGAATCAGAATGTTGCTTCAAATACAAGCTAG 1458 0.454 MVLSNKKLKQKLRAELAQSESANPDCSFKTLLDSATPNILLSKREKRRKVRSLQQPETTQEGGDGRSVDESKEDEGAQKKSRKRKRKAEDSTVENGTVKDAKKSKKKKRDKRKKKNNKKAKTDQEKDANPGDEKLEASELTKSNGREQNVDVPTKVYVGGIPYYSTEDDIQSYFEGCGTITEIDCMTFPETGKFRGIALINFKTEAAAKRALALDGSDMGGLFLKIQPYKTTRTVKASDFAPKPVEGYNRIYVGNLSWNTTEDQLRSLFLSCSISSIRLGMDKETGEFRGYAHVDFTDSQSVKAAVALDQKVMHGRPVRITCAVPLKKLWKQTTTDVPAPMNTEVDGEKPSSTGTGKVKRRTCFECGEMGHISSACPKKQTNDAPAPMNTQVNSEKPSSTGSGKVKRRTCFECGEKGHVFSACPKKQTTDVPVPVPAPTNTQVNGEKPSSTGSGKVKRRTCFECGEKGHISSACPKNQNVASNTS 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g01136 485 SUPERFAMILY RNA-binding domain, RBD 242 327 IPR035979 GO:0003676
Accr1g01136 485 CDD RRM1_PHIP1 156 227 IPR034361 -
Accr1g01136 485 SUPERFAMILY Retrovirus zinc finger-like domains 447 481 IPR036875 GO:0003676|GO:0008270
Accr1g01136 485 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 73 228 - -
Accr1g01136 485 MobiDBLite consensus disorder prediction 63 80 - -
Accr1g01136 485 MobiDBLite consensus disorder prediction 337 356 - -
Accr1g01136 485 ProSiteProfiles Zinc finger CCHC-type profile. 363 378 IPR001878 GO:0003676|GO:0008270
Accr1g01136 485 MobiDBLite consensus disorder prediction 433 456 - -
Accr1g01136 485 SUPERFAMILY RNA-binding domain, RBD 152 232 IPR035979 GO:0003676
Accr1g01136 485 ProSiteProfiles Zinc finger CCHC-type profile. 410 425 IPR001878 GO:0003676|GO:0008270
Accr1g01136 485 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 154 231 IPR000504 GO:0003723
Accr1g01136 485 SUPERFAMILY Retrovirus zinc finger-like domains 396 428 IPR036875 GO:0003676|GO:0008270
Accr1g01136 485 MobiDBLite consensus disorder prediction 102 119 - -
Accr1g01136 485 MobiDBLite consensus disorder prediction 15 148 - -
Accr1g01136 485 SUPERFAMILY Retrovirus zinc finger-like domains 351 381 IPR036875 GO:0003676|GO:0008270
Accr1g01136 485 Gene3D - 439 485 - -
Accr1g01136 485 Gene3D - 342 390 - -
Accr1g01136 485 Gene3D - 391 432 - -
Accr1g01136 485 SMART c2hcfinal6 460 476 IPR001878 GO:0003676|GO:0008270
Accr1g01136 485 SMART c2hcfinal6 362 378 IPR001878 GO:0003676|GO:0008270
Accr1g01136 485 SMART c2hcfinal6 409 425 IPR001878 GO:0003676|GO:0008270
Accr1g01136 485 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 249 325 IPR000504 GO:0003723
Accr1g01136 485 SMART rrm1_1 250 321 IPR000504 GO:0003723
Accr1g01136 485 SMART rrm1_1 155 227 IPR000504 GO:0003723
Accr1g01136 485 Pfam Zinc knuckle 361 378 IPR001878 GO:0003676|GO:0008270
Accr1g01136 485 Pfam Zinc knuckle 459 476 IPR001878 GO:0003676|GO:0008270
Accr1g01136 485 Gene3D - 238 329 IPR012677 -
Accr1g01136 485 Coils Coil 98 125 - -
Accr1g01136 485 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 251 318 IPR000504 GO:0003723
Accr1g01136 485 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 156 222 IPR000504 GO:0003723
Accr1g01136 485 Gene3D - 90 237 IPR012677 -
Accr1g01136 485 MobiDBLite consensus disorder prediction 120 141 - -
Accr1g01136 485 MobiDBLite consensus disorder prediction 377 403 - -
Accr1g01136 485 MobiDBLite consensus disorder prediction 87 101 - -
Accr1g01136 485 MobiDBLite consensus disorder prediction 431 456 - -
Accr1g01136 485 ProSiteProfiles Zinc finger CCHC-type profile. 461 476 IPR001878 GO:0003676|GO:0008270
Accr1g01136 485 MobiDBLite consensus disorder prediction 16 37 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g01136 Accr-Chr1 32626598 32630451 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g01136 154 323 Eukaryotic Initiation Factors Gene Family AT3G16380 30.387 5.39e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g01136 - - mnt:21408100 477.248