Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g01105 ATGGCTTCTCTGCTACCATACGGCGACGTTGATTTCAGCTTGAGGGCAATGGCGGGTCGCGCTGAGGGATTTGGCCGCAACGCCATTGGTGGCCTTCACGGCCCTCTCTATTTCGTCACCACCCTCGCTGATGACGGTCCTGGATCCCTTCGGGCTGGATGCCGTAGAAAGGAGCCACTCTGGATTGTTTTTGAAGTCTCGGGTACAATTCATCTTTCATCATACTTGAGTGTATCTTCTTATAAGACAATAGATGGCCGAGGCCAGAGCATAAAGCTCACAGGAAAGGGTTTAAGGTTGAAAGAATGTGAGCATATAATTGTATGCAACCTTCAGTTTGAAGGTGGGAGGGGCCATGATGTTGATGGCATTCAAATAAAACCAAACTCTAGGCACATATGGATAGATCGGTGCAGTCTTCGTGATTACGATGACGGGCTTATAGACATTACAAGACAAAGCACAGACATCACTGTATCAAGATGTTACTTTGCACAGCATGATAAGACCATGCTAATTGGAGCTGATCCATCTCACATCGGTGATCGATGTATCCGGGTGACAATTCATCACTGCTTCTTCGATGGGACACGACAAAGACAACCTCGTCTTAGATTTGGAAAAGTTCATCTGTACAACAATTACACGAGAAACTGGGGTATATATGCTGTTTGTGCTAGTGTTGAATCCCAGATATACTCTCAGTGCAACATTTATGAAGCAGGAATTAAGAAAAAGACTTTTGAATTCTATACAGAGAAGGCGGCAGATAAGGCGGAGCAGAAATCTGGCACCATAATATCTGAAGGAGACATGTTTCTGAATGGTGCACAACCATGCTTACAAACACAACACACAGAAGGATGCAACATGTTCCACCCTTCTGAATATTATCCCATATGGACTATGGAACCACCCTCACATTCTTTTAAAGATGTTCTGCAAATATGTGCAGGTTGGCAATCTGTTTGTCGGCCAGCCGAAATCTCAACTAATTTGGATTAG 1005 0.4438 MASLLPYGDVDFSLRAMAGRAEGFGRNAIGGLHGPLYFVTTLADDGPGSLRAGCRRKEPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQSIKLTGKGLRLKECEHIIVCNLQFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFAQHDKTMLIGADPSHIGDRCIRVTIHHCFFDGTRQRQPRLRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGIKKKTFEFYTEKAADKAEQKSGTIISEGDMFLNGAQPCLQTQHTEGCNMFHPSEYYPIWTMEPPSHSFKDVLQICAGWQSVCRPAEISTNLD 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g01105 334 SMART amb_all 32 245 IPR002022 -
Accr1g01105 334 Pfam Pectate lyase 76 238 IPR002022 -
Accr1g01105 334 PRINTS Pollen allergen Amb family signature 222 241 IPR018082 -
Accr1g01105 334 PRINTS Pollen allergen Amb family signature 200 219 IPR018082 -
Accr1g01105 334 PRINTS Pollen allergen Amb family signature 20 37 IPR018082 -
Accr1g01105 334 Gene3D - 9 309 IPR012334 -
Accr1g01105 334 PANTHER PECTATE LYASE 18-RELATED 15 284 IPR045032 GO:0030570
Accr1g01105 334 SUPERFAMILY Pectin lyase-like 18 322 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g01105 Accr-Chr1 31731344 31734344 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g01105 42 328 Polysaccharide Lyase AT3G55140 81.882 0.0 511
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g01105 K01728 - gmx:100802068 604.364