Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Accr1g01089 | ATGGCATCCATTCAAGAAGCCTCTGAAAATTACTTTAACATCAACTTTATAGTTCATTCTCCGGTTATTTCGCGTGAGACAAGAGTTCCTGAATCAATGTCTTTTCTTGTGTTTGAACCCCCTTTCTTCATACCATGTGAAGAATTGCTTGAAGATGTTTCAGGATTTCTTCACAGAAATATATCTAATTATGTTTGTGAGCGTGACCTTCAACAACTAGCATCTCAAATCATATCTTATACTCATAATGCACTTCAAAATACTGCCTTTGAAACTGAAACAACAGAAGCTCGCATAATACCATTGTTCGTGGATTTACCGTTAATCACTTTGGATAGTTCAGAAACTCAAAATTTGATTGAGATTGGTGGTGAAGATTCTAATCTATTGACTGAAATCATGGAACAATCAATGCAACAGTTAAATATGATTCCAACATCAAAGAAGGCTATAGCATCACTCAAGAAATTGGAAACTCTAAATGATGAAATGAAGGCAAACAAGTGTAGCATATGCATGGAAGGTTTTGAAGAAGATTTTGGAGACGTTTCTGCAATGCCATGCAACCATTTTTATCATCATAATTGTATTGTAACATGGCTGGAAACAAACCATACATGTCCATTGTGTCGCTTTCAAATGCCTACAGAATAA | 654 | 0.3517 | MASIQEASENYFNINFIVHSPVISRETRVPESMSFLVFEPPFFIPCEELLEDVSGFLHRNISNYVCERDLQQLASQIISYTHNALQNTAFETETTEARIIPLFVDLPLITLDSSETQNLIEIGGEDSNLLTEIMEQSMQQLNMIPTSKKAIASLKKLETLNDEMKANKCSICMEGFEEDFGDVSAMPCNHFYHHNCIVTWLETNHTCPLCRFQMPTE | 217 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Accr1g01089 | 217 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 96 | 215 | - | - | |
| Accr1g01089 | 217 | SUPERFAMILY | RING/U-box | 160 | 215 | - | - | |
| Accr1g01089 | 217 | Coils | Coil | 147 | 167 | - | - | |
| Accr1g01089 | 217 | SMART | ring_2 | 169 | 210 | IPR001841 | - | |
| Accr1g01089 | 217 | SMART | ringv_2 | 168 | 211 | IPR011016 | GO:0008270 | |
| Accr1g01089 | 217 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 131 | 216 | IPR013083 | - | |
| Accr1g01089 | 217 | ProSiteProfiles | Zinc finger RING-type profile. | 169 | 211 | IPR001841 | - | |
| Accr1g01089 | 217 | CDD | RING-H2_PA-TM-RING | 169 | 211 | - | - | |
| Accr1g01089 | 217 | Pfam | Ring finger domain | 167 | 211 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Accr1g01089 | Accr-Chr1 | 31017721 | 31018374 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Accr1g01089 | 130 | 217 | C3H Transcription Factor Family | AT1G18760 | 36.264 | 5.41e-15 | 69.3 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Accr1g01089 | - | - | pcin:129298487 | 246.514 |