Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g01087 ATGGCATCCATTCAAGAAGCCTCTGAAAATTACTTCAACATCAACTTTATAGTTCATTCTCTTGTCATTTCGCGCGAGACAAGAGTTCATGAATCAATGTCTTTTCTTGTGTTTGAACCCCCTTTCTTCATACCATGTGAAGAATTGCTTGAAGATGTTTCAGGATTTCTTCATAGAAATATATCTAATTATGTTTGTGAGCATGACCTTCAACAACTAGCATCTCAAATCATATCTTATACTCATTATGCACTTCAAAATACTGCCTTTGAAACTGAAACTAAAGAAGCTCGCATAATACCATTGTTCGTGAATTTACCTTTAATCACTTTGGATGGTTCGGAAACTCAAAATTTGATTGAGATTGGTGGTGAAGATTCTAATCTATTAACAGAAATCATGGAGCAATCAATGCAACAGTTAAATATGATTCCAACATCAAAGAAGGCTATAGCATCACTCAAGAAATTGGAAACTCTAAATGATGAAATGAAGGCAAACAAGTGTAGCATATGCATGGAAGGTTTTGAAGAAGATTTTGGAGACGTTTCTGCAATGCAATGCAACCATTTTTATCATCATAATTGTATTGTAACATGGCTGGAAACAAACCATATATGTCCATTGTGTCGCTTTCAAATGCCCACAGAATAA 654 0.3456 MASIQEASENYFNINFIVHSLVISRETRVHESMSFLVFEPPFFIPCEELLEDVSGFLHRNISNYVCEHDLQQLASQIISYTHYALQNTAFETETKEARIIPLFVNLPLITLDGSETQNLIEIGGEDSNLLTEIMEQSMQQLNMIPTSKKAIASLKKLETLNDEMKANKCSICMEGFEEDFGDVSAMQCNHFYHHNCIVTWLETNHICPLCRFQMPTE 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g01087 217 Pfam Ring finger domain 167 211 IPR001841 -
Accr1g01087 217 Coils Coil 147 167 - -
Accr1g01087 217 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 96 215 - -
Accr1g01087 217 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 131 216 IPR013083 -
Accr1g01087 217 ProSiteProfiles Zinc finger RING-type profile. 169 211 IPR001841 -
Accr1g01087 217 SMART ring_2 169 210 IPR001841 -
Accr1g01087 217 SUPERFAMILY RING/U-box 160 215 - -
Accr1g01087 217 CDD RING-H2_PA-TM-RING 169 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g01087 Accr-Chr1 30964455 30965108 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g01087 130 217 C3H Transcription Factor Family AT1G18760 35.165 1.11e-13 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g01087 - - pcin:129298487 241.121