Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Accr1g01084 | ATGGCATCCATTCAAGAAGCCTCTGAAAATTACTTCAACATCAACTTTAGAGTTCATTCTCTTGTCATTTCGAGTGAGACAAGAGTTCCTGAATCAATATCTTTTCTCGTGTTTGAACCTCCTTTCTTCATACCTTGTGATGAATTGCTTCAAGATGTTTTTGGATTTCTTCAAAGAAATATATCTGATTATGTTTGTGAGCATGACCTTCAACAACTGGCATCTCAAATCATATTTCATACTCATTATGCACTTCAAAATACTGCCTCTGAAACTGAAACTACAGAAGCTCGCATAATACCATTGATCTTCGATTTACCGTTAATCACTCTGGATGGATTAGAAGCTCAAAGTTTGACTGAGATTGGTGGTGGTGATTCCAATCAATTGACAGAAATCATGGAGCAATCAATGCAACAATTAAATATGATTCCAACATCAAACCAGGCTATAGCATCACTCAAGAAATTGGAAACTTTAAATGATGAAATGAAGGCAAACAAGTGTAGCATATGCATGGAAGGTTTTGAAGAAGATTTTGGAGATGTTTCTGCAACGCCATGCAACCATTTTTATCACCATAATTGTATTGTAACATGGCTGGAAACAAACCATACATGTCCTTTGTGTCGCTTTCAAATGCCTACGGAATAA | 654 | 0.3609 | MASIQEASENYFNINFRVHSLVISSETRVPESISFLVFEPPFFIPCDELLQDVFGFLQRNISDYVCEHDLQQLASQIIFHTHYALQNTASETETTEARIIPLIFDLPLITLDGLEAQSLTEIGGGDSNQLTEIMEQSMQQLNMIPTSNQAIASLKKLETLNDEMKANKCSICMEGFEEDFGDVSATPCNHFYHHNCIVTWLETNHTCPLCRFQMPTE | 217 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Accr1g01084 | 217 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 99 | 215 | - | - | |
Accr1g01084 | 217 | Coils | Coil | 147 | 167 | - | - | |
Accr1g01084 | 217 | SMART | ring_2 | 169 | 210 | IPR001841 | - | |
Accr1g01084 | 217 | Pfam | Ring finger domain | 167 | 211 | IPR001841 | - | |
Accr1g01084 | 217 | SUPERFAMILY | RING/U-box | 159 | 215 | - | - | |
Accr1g01084 | 217 | SMART | ringv_2 | 168 | 211 | IPR011016 | GO:0008270 | |
Accr1g01084 | 217 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 131 | 216 | IPR013083 | - | |
Accr1g01084 | 217 | ProSiteProfiles | Zinc finger RING-type profile. | 169 | 211 | IPR001841 | - | |
Accr1g01084 | 217 | CDD | RING-H2_PA-TM-RING | 169 | 211 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Accr1g01084 | Accr-Chr1 | 30755163 | 30755816 | Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Accr1g01084 | 128 | 217 | C3H Transcription Factor Family | AT1G18760 | 35.484 | 8.90e-15 | 68.9 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Accr1g01084 | - | - | pcin:129298487 | 229.565 |