Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Accr1g01062 | ATGAGCACCCTCGTACCAGTTCGGGGAAAAGAAAAATATGATGTGTTCTTGAGCTTCAGAGGCGAAGACACTAGGGCGTCTTTCACTTCTCATCTCTCCTCCTCCTTAAGCAATGATGGAATTGTTGTTTTCAAAGATGATATTGACCTTCCTCGGGGGAATAATATCTCAATCGAACTGCAACGTGGTATTGAAAATTCTACTATTTCAATCATTATCTTCTCCAAAGATTATGCTGGTTCAAGATGGTGCCTCAATGAGCTCTCAAAAATCATGGAGGTTCATAAAGTTCAAGGTCGGGTAGTTTTGCCTGTGTTCTATGACGTGGATCCGTCTGAAGTTCGTAATCAAACCTCTAGTTTTGGAGTTTCGTTTCAAGATCTTATACAAAGAAGTTCACCCACACATGATCAAGTATTGAGGTGGAGGACAGATCTCCGTGAAGCTGGGAGCATTGCAGGTTTTGTTGTGCTCAATTCCAGGAATGAAAGTGATGATATCAAGAATATTGTTAAGCATGTTTGTCAAGTATTGGACAAGAAAGATTTGTTTATTGCTGAATATCCTGTAGGAGTGAACCCTCGTGTGCAAGATTTGATTAAAATGTCACGAAACCATCCACCAAATAGCGTTCTCTTGCTAGGCATATGGGGGATGGGCGGTATAGGTAAAACAGTGATCGCCAAAGCCATTTACAATGAAATTGGTCGAAATTTTGAGAGTAGAAGTTTTCTTTTAAATATTAGGGAAGATTGGGAGCAAGGTCGTGGTTCAGACCTGCAAGAACAACTTCTTTCTCAAATCTGTAAAACAAAGATGAAAATACATTGCACTGAGTCAGGAAAAAGCATATTAAAAAAAAGACTTCACCAAAAGCGAGCACTGGTTGTTCTTGATGATGTGGATACAGTGGATCAACTAAATGCTTTATCTGGTGGCGGTAAATGGTTTTGTCCAGGAAGTAGAATAATCATCACAACTAGAGATGAACATCTACTAAGATTCCTTAATGTGGATGTGAACAATGTATATAGAATGAAAAACATGGGTGAAAGTGAATCAATTGAGCTTTTTAGTTGGCATGCGTTTAGGCAACCAAGTCCTAGGGAAGGGTTTGTTGAGCTTTCTAGAAACATAGTTGCTTATTCTAGAGGACTGCCACTAGCTCTTGAAATTCTTGGCTGCTATTTGCTTGACAGGGGAGTGACAGAGTGGGAGAGTGTATTGGACAAACTAAAAAAAATCCCCAATGATCAGATACAAAAGAAGCTAAAAATAAGCTTTGACGGTTTAAAGGATGATACAGAGAGAGAAATCTTCCTTGATATATCTTGCTTCTTTATTGGAATGGATAGGAATGATGTCACACAGATATTGAATGCTAGTGGATTTTTTGCGGGCATTGGTATTAGTGTCCTTGTAGAGAGAAGCCTCATAACTGTTGATGAGAAGAACAAGCTTGGTATGCATGATTTGTTGCGAGATATGGGAAGAGAAATTATCCGTGAAAAGTCACCAAAAGATTTTGGGAAGCGTAGTAGGTTATGGTTTCATGAAGATGTGATTGATGTCTTATCAAAACATATGGGTACAAAATCTGTGGAGGGGCTAGCTTTGAATCTGTCGCAACATAATAAAGTTTCTTTTTTAATGAAAGCATTCAAGAAAATGAAGAAACTCAGACTGCTTTGTCTTGTTAATGTGGAACTTCATGGAAACTGTAAATACATTAGTAGCAATCTCAAATGGTTCTGTTGGCACAAGTTTCCTTTGGAACACATCCCTGACAACTTCTTTCCAAATAATTTAGTCTCTATTGAATTAAAATACAGCAACTTGAGACTTTGGAGGGATCCCCAGTTATTGGAGAACCTGAAAATCCTCAATCTCAGCCACTCTCCTTACTTGGTGTCAACTCCTGATTTTTCAAAACTACCAAATCTTGAAAAGTTGATGCTCAAAGATTGTCCAAATTTGTCTGTGATACATCATACGATAGGGAATCTTGACAAAGTTCATTTGCTAAATTTGAAGGATTGTACTGGCCTTCAAAGTCTCCCAAGAAGTATTTATAAATTGAAGTCTTTAAAAACTCTCATTCTTTCTGGTTGTATGATGATTGAAAAGTTGGAGGAGGATATAGAGCAGATGGATTCTTTGTCAACTCTAATTGCAGATAACACAGCAATAACTCAAATGCCCATTTCGTTAGTGAGATCAAAAAGCATTGGATTTATATCAATTTGCGGTTACCAAGGATTTGCACGTGATGTAATTCCTTCTCTCATTTGGTCAAGGATGTCTCCAACAAATAATCCTCTATCTTCAATTTTTTCAGATAAATTGAATTGCTCTATCCCTAGTCCTTCATCGATCTATGAGAGCCCAAAAAAGCCACCAAGCCTTTTATTGGAATGCGCATATGAGAATGGTGCCGTAGAAAATCGAGGTGCTGAAAAAATCTCGGGTTCTTTGTATGCCCAAAGTTGTAGAGACATGGCAGAAACACCAAATACTTCAAAAATATTGGATACTGAGTCTTCTATGTTGGCTAATCATCATAGTCAAGTTGGTATCTCAAGGCCAGATAAATGTTTGAGACATCTACTAATTCACATTGGAAACAATGACCAAGTCACTAGTGCTCTTTCAGAGTGTATTTTACAGGGTCTCAAAGATTCTGGTGATGATTGTGCCCTCCCAGGTGACAAATATCCCTATTGGCAATGCTTTAAGGGTGAAGGAGCTTCTGTAAAATTTAAAGTGCCTCTAGTTAATAGTAGTTCTGAGTTAAAAGGGATGACCCTTTGCTGTGAATATTACTCCTTACGTGATTTGAGCAATGTGGAGGAGTTTGACTCTTTCATTAGCATGTTCATCAAAAACTACACAAAGAGGACCACACTGCACTATAGGCAAGACACAGTGGCCTCCTTTGAAGAAGCAAAATGGAAGGAAATAATGTCAAATTTAGACTCTGATGACCAAGTGGAGATTATTGTAGTTTTTCGTAATGGATTCACTATGAAAAGAACAGCTGTTTACTTAAAATATTATGAGTCATTTGCTGAATTGAAGGAGGATCCTCCATCATCAAGTAGAAGGCATACAGATGACGAAAGCCATGATTTCAAGCTCCCAGAGCCTAAGCGTCAGAAAATAGATTAA | 3168 | 0.381 | MSTLVPVRGKEKYDVFLSFRGEDTRASFTSHLSSSLSNDGIVVFKDDIDLPRGNNISIELQRGIENSTISIIIFSKDYAGSRWCLNELSKIMEVHKVQGRVVLPVFYDVDPSEVRNQTSSFGVSFQDLIQRSSPTHDQVLRWRTDLREAGSIAGFVVLNSRNESDDIKNIVKHVCQVLDKKDLFIAEYPVGVNPRVQDLIKMSRNHPPNSVLLLGIWGMGGIGKTVIAKAIYNEIGRNFESRSFLLNIREDWEQGRGSDLQEQLLSQICKTKMKIHCTESGKSILKKRLHQKRALVVLDDVDTVDQLNALSGGGKWFCPGSRIIITTRDEHLLRFLNVDVNNVYRMKNMGESESIELFSWHAFRQPSPREGFVELSRNIVAYSRGLPLALEILGCYLLDRGVTEWESVLDKLKKIPNDQIQKKLKISFDGLKDDTEREIFLDISCFFIGMDRNDVTQILNASGFFAGIGISVLVERSLITVDEKNKLGMHDLLRDMGREIIREKSPKDFGKRSRLWFHEDVIDVLSKHMGTKSVEGLALNLSQHNKVSFLMKAFKKMKKLRLLCLVNVELHGNCKYISSNLKWFCWHKFPLEHIPDNFFPNNLVSIELKYSNLRLWRDPQLLENLKILNLSHSPYLVSTPDFSKLPNLEKLMLKDCPNLSVIHHTIGNLDKVHLLNLKDCTGLQSLPRSIYKLKSLKTLILSGCMMIEKLEEDIEQMDSLSTLIADNTAITQMPISLVRSKSIGFISICGYQGFARDVIPSLIWSRMSPTNNPLSSIFSDKLNCSIPSPSSIYESPKKPPSLLLECAYENGAVENRGAEKISGSLYAQSCRDMAETPNTSKILDTESSMLANHHSQVGISRPDKCLRHLLIHIGNNDQVTSALSECILQGLKDSGDDCALPGDKYPYWQCFKGEGASVKFKVPLVNSSSELKGMTLCCEYYSLRDLSNVEEFDSFISMFIKNYTKRTTLHYRQDTVASFEEAKWKEIMSNLDSDDQVEIIVVFRNGFTMKRTAVYLKYYESFAELKEDPPSSSRRHTDDESHDFKLPEPKRQKID | 1055 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Accr1g01062 | 1055 | SUPERFAMILY | L domain-like | 503 | 761 | - | - | |
| Accr1g01062 | 1055 | Gene3D | - | 349 | 432 | IPR042197 | - | |
| Accr1g01062 | 1055 | FunFam | Disease resistance protein (TIR-NBS-LRR class) | 9 | 180 | - | - | |
| Accr1g01062 | 1055 | PANTHER | LEUCINE-RICH REPEAT-CONTAINING PROTEIN | 13 | 839 | IPR044974 | GO:0006952 | |
| Accr1g01062 | 1055 | Pfam | NB-ARC domain | 211 | 420 | IPR002182 | GO:0043531 | |
| Accr1g01062 | 1055 | PRINTS | Disease resistance protein signature | 213 | 228 | - | - | |
| Accr1g01062 | 1055 | PRINTS | Disease resistance protein signature | 691 | 707 | - | - | |
| Accr1g01062 | 1055 | PRINTS | Disease resistance protein signature | 288 | 302 | - | - | |
| Accr1g01062 | 1055 | PRINTS | Disease resistance protein signature | 383 | 397 | - | - | |
| Accr1g01062 | 1055 | Gene3D | Ribonuclease Inhibitor | 517 | 793 | IPR032675 | - | |
| Accr1g01062 | 1055 | Pfam | TIR domain | 12 | 176 | IPR000157 | GO:0007165 | |
| Accr1g01062 | 1055 | SUPERFAMILY | "Winged helix" DNA-binding domain | 418 | 525 | IPR036390 | - | |
| Accr1g01062 | 1055 | Gene3D | - | 8 | 185 | IPR035897 | - | |
| Accr1g01062 | 1055 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 184 | 443 | IPR027417 | - | |
| Accr1g01062 | 1055 | Gene3D | - | 186 | 343 | IPR027417 | - | |
| Accr1g01062 | 1055 | SMART | till_3 | 12 | 152 | IPR000157 | GO:0007165 | |
| Accr1g01062 | 1055 | ProSiteProfiles | TIR domain profile. | 11 | 178 | IPR000157 | GO:0007165 | |
| Accr1g01062 | 1055 | MobiDBLite | consensus disorder prediction | 1025 | 1055 | - | - | |
| Accr1g01062 | 1055 | SUPERFAMILY | Toll/Interleukin receptor TIR domain | 9 | 155 | IPR035897 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Accr1g01062 | Accr-Chr1 | 30042322 | 30049257 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Accr1g01062 | 13 | 737 | WRKY Transcription Factor Family | AT4G12020 | 30.522 | 8.06e-78 | 278 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Accr1g01062 | - | - | pcin:129288835 | 1383.62 |