Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g01004 ATGAGTATGGAAAACCTGGCATCCAGCTTCAGTCAAGAACATGGCCCCATCAACCAATCTTTCTTCTCTGGGTCTCTTCCTTATTACCAGATGCCATCATCGAGTAGTACACTGATGGCTTCAAAATCACCAAAGTCATCAAATTTAAGCAACAGGAAGCCATCTATAAATATCACCATCCCTCCCATGGGCTCAATAAGGATGAGCTCATCGATGACGACATCATCGGATGTCGTCGCGGAGAACAACGACAGGCACTACCGAGGAGTTCGACGGCGGCCGTGGGGGAAGTTCGCGTCGGAGATTCGTGACCCAAATCGAAAGGGATCAAGGGTTTGGCTTGGAACCTTCGATACAGCCATGGAAGCAGCAAAAGCATATGACAGAGCTGCGTTTAAGATGAGAGGAAGCAAAGCTATACTCAATTTCCCTCTTGAGATTGGATCAAGTTCTGAAGAATCTAATAAGCCAACAGAGGAAAAAGTGGTTGGTGAGAAAAGAGGAAGAGAGAAAGAAGAAGAGAGTGAACAGGAAAAGAATGAAGAATTTAAGAAGATGAAGAAGGAGGAGGAGGAGGAGGAGGAAGTGGCAATTTCACCCACCAGTGGGGTTGTTTCTTCTTCTCAGTCTTCTTCTTCGGCGACGGTGGGTCCGTTAACGCCGTCATTTTGGAATGGATTTTGGGATACAGAGGTGGCCAACACTATTTTCAGTGTTCCTCCGTTATCGCCGTTATCTCCTCCAATGATGGTTGTGAGGTAG 762 0.4659 MSMENLASSFSQEHGPINQSFFSGSLPYYQMPSSSSTLMASKSPKSSNLSNRKPSINITIPPMGSIRMSSSMTTSSDVVAENNDRHYRGVRRRPWGKFASEIRDPNRKGSRVWLGTFDTAMEAAKAYDRAAFKMRGSKAILNFPLEIGSSSEESNKPTEEKVVGEKRGREKEEESEQEKNEEFKKMKKEEEEEEEVAISPTSGVVSSSQSSSSATVGPLTPSFWNGFWDTEVANTIFSVPPLSPLSPPMMVVR 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g01004 253 Coils Coil 169 196 - -
Accr1g01004 253 SMART rav1_2 86 150 IPR001471 GO:0003700|GO:0006355
Accr1g01004 253 MobiDBLite consensus disorder prediction 32 70 - -
Accr1g01004 253 CDD AP2 86 144 IPR001471 GO:0003700|GO:0006355
Accr1g01004 253 ProSiteProfiles AP2/ERF domain profile. 86 144 IPR001471 GO:0003700|GO:0006355
Accr1g01004 253 PRINTS Ethylene responsive element binding protein signature 110 126 IPR001471 GO:0003700|GO:0006355
Accr1g01004 253 PRINTS Ethylene responsive element binding protein signature 87 98 IPR001471 GO:0003700|GO:0006355
Accr1g01004 253 MobiDBLite consensus disorder prediction 153 194 - -
Accr1g01004 253 Pfam AP2 domain 86 136 IPR001471 GO:0003700|GO:0006355
Accr1g01004 253 MobiDBLite consensus disorder prediction 200 219 - -
Accr1g01004 253 FunFam Ethylene-responsive transcription factor 2 85 146 - -
Accr1g01004 253 Gene3D AP2/ERF domain 85 146 IPR036955 GO:0003700|GO:0006355
Accr1g01004 253 SUPERFAMILY DNA-binding domain 86 146 IPR016177 GO:0003677
Accr1g01004 253 PANTHER DNA-BINDING DOMAIN 50 195 IPR044808 GO:0003700|GO:0009873
Accr1g01004 253 MobiDBLite consensus disorder prediction 148 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g01004 Accr-Chr1 27722739 27723500 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g01004 46 245 AP2-EREBP Transcription Factor Family AT5G51190 46.535 1.11e-54 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Accr1g01004 AP2 5.4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g01004 K09286 - gmx:100816416 189.504