LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr1g00983	ATGGCCTCGCCGATACCAGGTAACTCTCGATCAACTTCTCTCAGGGATGACGACTCCGACACTGCCAAGCTCGAAGGCACCGGTAGCTGGGACGCCCTCGAATGGACCAAAATTGAGCCCATCATACGCCCCGTTTCGCGGGAAAATTTGGATTTCTTGTTTGAGGCTGAGCAAGTCAAAGCCCAAGAATATGGTGTTTCGTTTGTTAATAACAACGATTTGGGTACATTAATGGTTACAAATTTTCGCCTCTTATTTCTGAGTGAGAAAACCTCAAAAGTTATTGGCCTTGGAACGATTCCACTTGCAACAATCGAGAAGTTTACCAAGATAGCTTTGAAGACTCAATCAACTCTTCGTCAGTCAGACAAAACACAATCACAGAGATTGCTCCAAGTCATTGGAAAGGATATGAGAATTATTGTTTTTGGTTTCAGACCTCGTACAAAACAGAGACGTGCGATATTTGAAGCATTACTGAGATTGACAAAACCTGCAAGACTTTGGGATCTCTATGCTTTTGTATCAGGGACTTCTAGATTAAACAACTCGAACCCAAAAGTTCGCTTACTGGATGAGTATTTTCGACTTCTTGGGATAGGATCTTATCGTGGATCAATCAATATGATCAAAAGTGGGTCCTTTACCTTGTCAAATGCCTCTTGGAGAATAAGTAGTGTGAATTCCAACTATACTATGTGTCCGACATATCCATTTGCATTGATTGTTCCTGAGAGCATTAGTGATGATGAAGTGCTCCAAGCTTCCACATTTCGGGCAAGATGTCGGTTGCCTGTAGTCTCATGGTGTGATCCTGGTTCTGGTGCTGTCCTTGCTCGATCATCCCAACCCTTAGTTGGTCTCATGATGAATATGAGAAGCAACACAGATGAAAAGCTTGTGGCTGCACTTTGCAACAAACTGGATGATGGTTCACGGAGGAAGCTATATATTTCTGACGCAAGACCAAGAAAAAATGCATTAGCTAATGGGGCCATGGGAGGTGGTTCAGAGTCATCATCAAATTACTTTCAATCTGAGATAGTCTTCTTTGGGATATCCAACATCCACGCAATGAGAGATAGCTTTGCTAGACTTAGAGAGTACTTAGATACTTATGGAAGAACATCATCAGATGGAATGTCATCTTTATTGAGAAATGGTGGGTGGACATGGGGTGGAGGATTACTAAGTAGTATGTCTGCTTCAGTATCAATGCTTGGGGACAGTGGATGGTTGCTGCACATTCAAAATGTCTTGGCTGGTTCAGCTTGGATTGCAGCTCGTGTTGCTAAAGAAAAGGCCTCTGTGCTTGTACATTGCAGTGATGGGTGGGATAGAACAACTCAATTGGTTTCACTTGCTAGTTTGTTGCTTGATCCATACTATCGGACGATCAAAGGGTTTCAGGCACTTGTTGAAAAAGACTGGCTAGCATTTGGTCATCCATTCTCAGATCGTGTTGGAATGCCATCGTTCACTGGAAGTGGCAACACACCTTCTGAGTTGTCTTGGCATTCTTCTGGAAATTACCCATCACCACCCATGAATCAATCATCAGGAGCATTCAGTTCCCAACCTCCAACCACTCATGCACAAACTTCAAACAACTACTCTCCAATTTTCCTGCAGTGGGTTGATTGTGTTTCACAGTTGCTGCGGACATATCCTTTTGCTTTCGAGTTCTCCTCCGCTTTCCTGGTGGACTTCTTAGACTGTGTGCTTTCTTGCCGCTTTGGAAACTTTTTATGTAACAGCGAGAAGGAAAGGCAGCAATTGAATGTTTTTGAAGCTTGTGGATGTTTGTGGGCGTACCTAGCTGAGTTGCGTGCTTCAGAGAGTGGTTCTCATGTGCATTATAACCTCTTTTACAAACCGTCAAAGCACAATGGTCATCTTCTACCTCCAGCAGCAGCTTTGGCCCCAACTTTGTGGCCCCAATTTCATCTTCGTTGGGTTTGTCATGAAGAATCACAGGCTGGGCAGATTGAAGTAGAATGTAGGAAGATGGCTTTAAATTTCTCTGAGATGAGGAAGGCTAAAGAAGTGGCAGAGAGGAAAGCCAAAGAAATTTCTAATGCCATGGAATCACTGAAATTAGAACATAGAAACGAGAAGCAACTTAGAATATCAGCAATGAATATAGCCAAAAGGAAAAACAAAGAAAATGTGGTGATGAAGAGGGCAATTCAGTCAATGGGATGCAAAGTTTGCTTCTCTAGCAGCGATGCTAGTATTGTTGATATTGAGATCTGCCCAGCCGAAGCAGCACAAAACTTGAAGTATTCTCTAACCAGAAAGGAATTTGGTGATAAAATGGATTTGTCTGCTTCAGAAACAATTACAGAAGATGACAATGATGCAAACAATGCTTTTAGTCAAGCATGTGAAACTCTATGCCCATTCCGCACCCAAGACGGATGCTGCAGGTGGCCCAATGCCGCTTGTGCTCATCGTGGCAGCCAGTTTGTTGGTCTAAAGGCAAATTTTGATGCTCTTGATCAACTCTTAATTGATGATGATTATTTCAAGCCTGAGTGA	2541	0.429	MASPIPGNSRSTSLRDDDSDTAKLEGTGSWDALEWTKIEPIIRPVSRENLDFLFEAEQVKAQEYGVSFVNNNDLGTLMVTNFRLLFLSEKTSKVIGLGTIPLATIEKFTKIALKTQSTLRQSDKTQSQRLLQVIGKDMRIIVFGFRPRTKQRRAIFEALLRLTKPARLWDLYAFVSGTSRLNNSNPKVRLLDEYFRLLGIGSYRGSINMIKSGSFTLSNASWRISSVNSNYTMCPTYPFALIVPESISDDEVLQASTFRARCRLPVVSWCDPGSGAVLARSSQPLVGLMMNMRSNTDEKLVAALCNKLDDGSRRKLYISDARPRKNALANGAMGGGSESSSNYFQSEIVFFGISNIHAMRDSFARLREYLDTYGRTSSDGMSSLLRNGGWTWGGGLLSSMSASVSMLGDSGWLLHIQNVLAGSAWIAARVAKEKASVLVHCSDGWDRTTQLVSLASLLLDPYYRTIKGFQALVEKDWLAFGHPFSDRVGMPSFTGSGNTPSELSWHSSGNYPSPPMNQSSGAFSSQPPTTHAQTSNNYSPIFLQWVDCVSQLLRTYPFAFEFSSAFLVDFLDCVLSCRFGNFLCNSEKERQQLNVFEACGCLWAYLAELRASESGSHVHYNLFYKPSKHNGHLLPPAAALAPTLWPQFHLRWVCHEESQAGQIEVECRKMALNFSEMRKAKEVAERKAKEISNAMESLKLEHRNEKQLRISAMNIAKRKNKENVVMKRAIQSMGCKVCFSSSDASIVDIEICPAEAAQNLKYSLTRKEFGDKMDLSASETITEDDNDANNAFSQACETLCPFRTQDGCCRWPNAACAHRGSQFVGLKANFDALDQLLIDDDYFKPE	846

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr1g00983	846	Pfam	Myotubularin-like phosphatase domain	187	591	IPR010569	-
	Accr1g00983	846	MobiDBLite	consensus disorder prediction	499	532	-	-
	Accr1g00983	846	ProSiteProfiles	Myotubularin phosphatase domain.	199	649	IPR010569	-
	Accr1g00983	846	ProSitePatterns	Tyrosine specific protein phosphatases active site.	439	449	IPR016130	GO:0016311\|GO:0016791
	Accr1g00983	846	Gene3D	-	59	163	IPR011993	-
	Accr1g00983	846	PANTHER	MYOTUBULARIN-RELATED	64	761	IPR030564	-
	Accr1g00983	846	CDD	PTP-MTM-like	262	551	-	-
	Accr1g00983	846	SUPERFAMILY	(Phosphotyrosine protein) phosphatases II	217	653	IPR029021	-
	Accr1g00983	846	Coils	Coil	674	708	-	-
	Accr1g00983	846	SUPERFAMILY	PH domain-like	54	175	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr1g00983	Accr-Chr1	26726142	26767441	Dispersed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr1g00983	1	846	Protein tyrosine phosphatase (PTP) family	AT3G10550	64.033	0.0	1104

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr1g00983	K18081		-	gmx:100781842	1202.58

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