Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g00945 ATGGGATTTCAAAGAAAAACGGCTTCTCAGCTTCAGGCCCTTCATATTTTTTTTAAAGGGGAGAAGTATCCAACACAGAGAGAAATGAAAGACTATGCGGGTGCTTTGGGGTTGACATATAAGCAAGTTCAAGATTGGTTTGTTGAGCAAAGGAGGAGAGAGAAGAAGAAGCAAAATGGAGTGTTCGTACTGCCATGTTCTTCTTCGGGTCTCAACAATTCCTTTTCTGCTGGTCAAGAGTATCAAAGACCAAGTAAAAGGAGAAAGGTTTCTGAGAGTGCAATTGGAAGTCACCCTGGATCAAATAAGAAAGCACCATTGAGAAAACATGGTATTGGAAAAGGTTTAATGACAGTATGGAGGGCTACTAATCCAGATGCTGGAGATGTTCCTATTGGCTTTGGTGTTGGTGATAAGCCAAGGAAAACACTAACCAATGCTGGAAGACTAAAAACTAAACTACCGAATGCGAGAAGTAAAATACAAGAAAAAAGCAAGGCTTTCATGCAAAGAAGAGTGGATGTGAGTCAGAATCAACCACAGAAGGAAAAATGTGAACTTGTTTTGGGTAGATTTATAACTGAGGAGGAACTTGATCGAACGTCATTTTTAATTGATGATGAAGAGCTAGAAATGAGAGAGTTGAAAGCAGGGCCAGATACGCATATGTGCTCTGATCATCTTGCTTCCAGTGGAATTCTTGGCTGCTCTCTTTGTAAAGATGTGCTGTCTAAGTTCCCCCCAGATACTGTTAAGATGAAGAAACCCATCTGTTCACAACCTTGGGACTCCTCTCAAGAAACTGTCAAGAAACTTTTCAAGGTATTCCATTTTCTTTATACGTATGCTACTGTTGTCAATATTTGCCCCTTCACTCTTGATGAGTTTGCTCAAGCGTTTCATGATAAGGACTCAATGCTACTTGGAAAGATTCATGTGGCCCTTCTTACACTTCTTCTATCTGACATTGAAGTGGAACTTACCAGTGGATTTCTGCCTCATTTAAATAAATCATGCAATTTTCTTGCGTTGCTTCACTCGGTTGAAAATCGAGAATATTCGCTGGACTTCTGGAAAAGATCTCTTAACCCCCTTACATGGATAGAAATTCTCCGACAAGTTTTGGTTGCTGCTGGTTTTGGTTCGAAACAAGGTTGTTGGCGAAGAGAAGTGCTTAACAAGGAATTGAATCTCCTGGTAAAGTTTGGCTTATGTGCTGGCACCTTGAAGGGCGAGTTGTTTAAAATTTTGTTAGCACAAGGAAATAATGGGTCAAAGGTATCTGAGCTGGCAAAGTCAATGCAGATTGCTGAATTGAACCTTGCCAGCACAACAGAGGAGCTTGAATCCTTAATATGCTCAACTCTGTCAAGTGACATTACTTTATTTGAAAAGATTTCATCATCTGCTTATCGACTGCGCATGAGCTCTTTAAAGAAGGACATTGATGACATTGATGATATTCGGTCAGATACAGAAGACTCTGGAAGTATAGATGATGAATTTAATGACAGTAATACATGGATTAGTGGTGACGATTTTGAATGTGATTCAAGGAACTCTAGCTTAAGGAAATTGAAGCAGGCAAACAATTCTATAATGAAAAATAATATGCTTACAGCGTCCACTGAAATTGATGAGAGCCATCCAGGAGAAGTGTGGCTTTTAGGATTGATGGAGAGCGAATATTCAGATTTGAGCATTGAAGAAAAATTGAATGCATTAGTCGCTCTAACTGATCTTCTCTCTTCTGGGTCCAGCATTAGGATGAAGGATCCAACTAAAGTTTCTGCTGATTACAGTTCAAGCATCCAGTTACATGGTTCGGGAGCAAAAATAAAGAGGTCTATAGTAAAGAAGCCTGGGTCATATTCGAATCAGATAGGACCAATGCGTTATGTTAAAGAAGGGCATTCATCATTGAATCCTCATTCCTATCCAATGGATTCCTCATTGTTGATCTCAAATATCTATAGTAATAAGAAATCCTTTGAGAAGGTGAAAGAAGCAACCAAAATAGGAACCAATTCACACCTCATTCAATCAGTGTTTTTGGGATCTGACCGTAGATACAATAGATACTGGCTTTTCTTAGGGCCTTGCAATGTGGGTGACCCTGGCCACAGGAGAGTTTACTTCGAATCTTCTGAAGATGGCCACTGGGAAGTGATTGATAATGAAGAGACTTTATGTTCCTTGTTGTCAGTATTGGATGATAGAGGTAAACGAGAGGCACTTCTTGTTGAATCTTTGGAGAAGCTGAAGGCCCCTCTTTGCAGAGCTATGTCAAGGATGATGGTCAACCATGATGGAATGTGTGACACGTCAAATTCTGATCTTGATAGGATCACTGAGGACAGTTATTCTCCAGTATCTGATGTAGATAACCTGAGCCTAATTGAGATGGCCAGTGACTCTCTATCTTCTGCTGGGGCTGTGGTAATTGAAGCTGGGAAGAAGGGAGCAGAACAAATGCAAAAGTGGATCCGTCTCCAAGCATATGATTCATGGATTTGGAATTCCTTTTATTTGAATCTCAATGTTGTGAAATATGGTAGAAGGTCTTATATTGATTCTCTGGCCAGATGTGAGAGTTGTCATGATCTGTTCTGGAGGGATGAGAGACACTGTAAAATTTGCCATTTGACATTTGAGCTTGATTTTGATCTTGAAGAAAGATATGCAATCCACACAGCCACATGCAGGGTGAAAGAAGACAGCAGAACTTTTCCAAATCACAAAATCTTACCATCAAAGATTCAATCACTGAAAGCCGCAATTTATGCTATTGAGTCTGTTATGCCTGTAGATGCGCTGGTGGGTGCTTGGAGGAAGTCTGCTCATAAGCTATGGATCAGACGGCTCAGACGCACTTCGACTTCAACTGAGCTTTTTCAGGTTGTTGCTGATTTTGTTGGTGCTATGAATGAGGATTGGTTGTTTCAGTGCAGTTTTCCTGAGAGTGTGGTTGATAAAATCATTGCTTCTTTTGCATTTATGCCCCATACTTCATCAGCTCTAGCTCTATGGTTAGTGAAGTTGGATGCCATAATTGCACCGTACCTGGACAAAGTCCAACCTCCAAAGAAGCAGGTCATTACAAAAAGAAAATTCTCTGGCGGAGTTTAA 3129 0.4036 MGFQRKTASQLQALHIFFKGEKYPTQREMKDYAGALGLTYKQVQDWFVEQRRREKKKQNGVFVLPCSSSGLNNSFSAGQEYQRPSKRRKVSESAIGSHPGSNKKAPLRKHGIGKGLMTVWRATNPDAGDVPIGFGVGDKPRKTLTNAGRLKTKLPNARSKIQEKSKAFMQRRVDVSQNQPQKEKCELVLGRFITEEELDRTSFLIDDEELEMRELKAGPDTHMCSDHLASSGILGCSLCKDVLSKFPPDTVKMKKPICSQPWDSSQETVKKLFKVFHFLYTYATVVNICPFTLDEFAQAFHDKDSMLLGKIHVALLTLLLSDIEVELTSGFLPHLNKSCNFLALLHSVENREYSLDFWKRSLNPLTWIEILRQVLVAAGFGSKQGCWRREVLNKELNLLVKFGLCAGTLKGELFKILLAQGNNGSKVSELAKSMQIAELNLASTTEELESLICSTLSSDITLFEKISSSAYRLRMSSLKKDIDDIDDIRSDTEDSGSIDDEFNDSNTWISGDDFECDSRNSSLRKLKQANNSIMKNNMLTASTEIDESHPGEVWLLGLMESEYSDLSIEEKLNALVALTDLLSSGSSIRMKDPTKVSADYSSSIQLHGSGAKIKRSIVKKPGSYSNQIGPMRYVKEGHSSLNPHSYPMDSSLLISNIYSNKKSFEKVKEATKIGTNSHLIQSVFLGSDRRYNRYWLFLGPCNVGDPGHRRVYFESSEDGHWEVIDNEETLCSLLSVLDDRGKREALLVESLEKLKAPLCRAMSRMMVNHDGMCDTSNSDLDRITEDSYSPVSDVDNLSLIEMASDSLSSAGAVVIEAGKKGAEQMQKWIRLQAYDSWIWNSFYLNLNVVKYGRRSYIDSLARCESCHDLFWRDERHCKICHLTFELDFDLEERYAIHTATCRVKEDSRTFPNHKILPSKIQSLKAAIYAIESVMPVDALVGAWRKSAHKLWIRRLRRTSTSTELFQVVADFVGAMNEDWLFQCSFPESVVDKIIASFAFMPHTSSALALWLVKLDAIIAPYLDKVQPPKKQVITKRKFSGGV 1042
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g00945 1042 SUPERFAMILY Homeodomain-like 5 61 IPR009057 -
Accr1g00945 1042 SMART testlast3 266 325 IPR018501 -
Accr1g00945 1042 CDD homeodomain 4 58 IPR001356 GO:0003677
Accr1g00945 1042 ProSiteProfiles 'Homeobox' domain profile. 7 57 IPR001356 GO:0003677
Accr1g00945 1042 PANTHER HOMEOBOX PROTEIN SIX 167 1021 - -
Accr1g00945 1042 Pfam DDT domain 267 322 IPR018501 -
Accr1g00945 1042 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 550 589 IPR028942 -
Accr1g00945 1042 Pfam Homeodomain 6 56 IPR001356 GO:0003677
Accr1g00945 1042 Gene3D - 2 61 - -
Accr1g00945 1042 ProSiteProfiles DDT domain profile. 266 325 IPR018501 -
Accr1g00945 1042 SMART HOX_1 2 61 IPR001356 GO:0003677
Accr1g00945 1042 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 681 754 IPR028941 -
Accr1g00945 1042 MobiDBLite consensus disorder prediction 74 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g00945 Accr-Chr1 23089184 23105957 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g00945 168 1033 Homeobox Transcription Factor Family AT1G28420 26.879 3.59e-77 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Accr1g00945 WSD 2.4e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g00945 - - gmx:100792062 1355.5