Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g00943 ATGGGATTTCAAAGAAAAACGGCTTCTCAGCTTCAGGCCCTTCATATTTTTTTTAAAGGGGAGAAGTATCCAACACAGAGAGAAATGAAAGACTATGCGGGTGCTTTGGGGTTGACATATAAGCAAGTTCAAGATTGGTTTGTTGAGCAAAGGAGGAGAGAGAAGAAGAAGCAAAATGGAGTGTTCGTACTGCCATGTTCTTCTTCGGTAGGATACAATGCAGTTACCAATAGAAATGTTAAGAATCAGAAAAAGCAGAAAAGTCATCAGGAGTTGCTTACAGCAGACTACATTCTAAAAAAGATGTTCCGGAAGGGTGGCCCTTCTCTAGATGAGGAATTTGATTCTCTTCCTCTAGGTCCATCCCTCCACCATGTTGGTCTCAACAATTCCTTTTCTGCTGGTCAAGAGTATCAAAGACCAAGTAAAAGGAGAAAGGTTTCTGAGAGTGCAATTGGAAGTCACCCTGGATCAAATAAGAAAGCACCATTGAGAAAACATGGTATTGGAAAAGGTTTAATGACAGTATGGAGGGCTACTAATCCAGATGCTGGAGATGTTCCTATTGGCTTTGGTGTTGGTGATAAGCCAAGGAAAACACTAACCAATGCTGGAAGACTAAAAACTAAACTACCGAATGCGAGAAGTAAAATACAAGAAAAAAGCAAGGCTTTCATGCAAAGAAGAGTGGATGTGAGTCAGAATCAACCACAGAAGGAAAAATGTGAACTTGTTTTGGGTAGATTTATAACTGAGGAGGAACTTGATCGAACGTCATTTTTAATTGATGATGAAGAGCTAGAAATGAGAGAGTTGAAAGCAGGGCCAGATACGCATATGTGCTCTGATCATCTTGCTTCCAGTGGAATTCTTGGCTGCTCTCTTTGTAAAGATGTGCTGTCTAAGTTCCCCCCAGATACTGTTAAGATGAAGAAACCCATCTGTTCACAACCTTGGGACTCCTCTCAAGAAACTGTCAAGAAACTTTTCAAGGTATTCCATTTTCTTTATACGTATGCTACTGTTGTCAATATTTGCCCCTTCACTCTTGATGAGTTTGCTCAAGCGTTTCATGATAAGGACTCAATGCTACTTGGAAAGATTCATGTGGCCCTTCTTACACTTCTTCTATCTGACATTGAAGTGGAACTTACCAGTGGATTTCTGCCTCATTTAAATAAATCATGCAATTTTCTTGCGTTGCTTCACTCGGTTGAAAATCGAGAATATTCGCTGGACTTCTGGAAAAGATCTCTTAACCCCCTTACATGGATAGAAATTCTCCGACAAGTTTTGGTTGCTGCTGGTTTTGGTTCGAAACAAGGTTGTTGGCGAAGAGAAGTGCTTAACAAGGAATTGAATCTCCTGGTAAAGTTTGGCTTATGTGCTGGCACCTTGAAGGGCGAGTTGTTTAAAATTTTGTTAGCACAAGGAAATAATGGGTCAAAGGTATCTGAGCTGGCAAAGTCAATGCAGATTGCTGAATTGAACCTTGCCAGCACAACAGAGGAGCTTGAATCCTTAATATGCTCAACTCTGTCAAGTGACATTACTTTATTTGAAAAGATTTCATCATCTGCTTATCGACTGCGCATGAGCTCTTTAAAGAAGGACATTGATGACATTGATGATATTCGGTCAGATACAGAAGACTCTGGAAGTATAGATGATGAATTTAATGACAGTAATACATGGATTAGTGGTGACGATTTTGAATGTGATTCAAGGAACTCTAGCTTAAGGAAATTGAAGCAGGCAAACAATTCTATAATGAAAAATAATATGCTTACAGCGTCCACTGAAATTGATGAGAGCCATCCAGGAGAAGTGTGGCTTTTAGGATTGATGGAGAGCGAATATTCAGATTTGAGCATTGAAGAAAAATTGAATGCATTAGTCGCTCTAACTGATCTTCTCTCTTCTGGGTCCAGCATTAGGATGAAGGATCCAACTAAAGTTTCTGCTGATTACAGTTCAAGCATCCAGTTACATGGTTCGGGAGCAAAAATAAAGAGGTCTATAGTAAAGAAGCCTGGGTCATATTCGAATCAGATAGGACCAATGCGTTATGTTAAAGAAGGGCATTCATCATTGAATCCTCATTCCTATCCAATGGATTCCTCATTGTTGATCTCAAATATCTATAGTAATAAGAAATCCTTTGAGAAGGTGAAAGAAGCAACCAAAATAGGAACCAATTCACACCTCATTCAATCAGTGTTTTTGGGATCTGACCGTAGATACAATAGATACTGGCTTTTCTTAGGGCCTTGCAATGTGGGTGACCCTGGCCACAGGAGAGTTTACTTCGAATCTTCTGAAGATGGCCACTGGGAAGTGATTGATAATGAAGAGACTTTATGTTCCTTGTTGTCAGTATTGGATGATAGAGGTAAACGAGAGGCACTTCTTGTTGAATCTTTGGAGAAGCTGAAGGCCCCTCTTTGCAGAGCTATGTCAAGGATGATGGTCAACCATGATGGAATGTGTGACACGTCAAATTCTGATCTTGATAGGATCACTGAGGACAGTTATTCTCCAGTATCTGATGTAGATAACCTGAGCCTAATTGAGATGGCCAGTGACTCTCTATCTTCTGCTGGGGCTGTGGTAATTGAAGCTGGGAAGAAGGGAGCAGAACAAATGCAAAAGTGGATCCGTCTCCAAGCATATGATTCATGGATTTGGAATTCCTTTTATTTGAATCTCAATGTTGTGAAATATGGTAGAAGGTCTTATATTGATTCTCTGGCCAGATGTGAGAGTTGTCATGATCTGTTCTGGAGGGATGAGAGACACTGTAAAATTTGCCATTTGACATTTGAGCTTGATTTTGATCTTGAAGAAAGATATGCAATCCACACAGCCACATGCAGGGTGAAAGAAGACAGCAGAACTTTTCCAAATCACAAAATCTTACCATCAAAGATTCAATCACTGAAAGCCGCAATTTATGCTATTGAGTCTGTTATGCCTGTAGATGCGCTGGTGGGTGCTTGGAGGAAGTCTGCTCATAAGCTATGGATCAGACGGCTCAGACGCACTTCGACTTCAACTGAGCTTTTTCAGGTTGTTGCTGATTTTGTTGGTGCTATGAATGAGGATTGGTTGTTTCAGTGCAGTTTTCCTGAGAGTGTGGTTGATAAAATCATTGCTTCTTTTGCATTTATGCCCCATACTTCATCAGCTCTAGCTCTATGGTTAGTGAAGTTGGATGCCATAATTGCACCGTACCTGGACAAAGTCCAACCTCCAAAGAAGCAGGTCATTACAAAAAGAAAATTCTCTGGCGGAGTTTAA 3300 0.4039 MGFQRKTASQLQALHIFFKGEKYPTQREMKDYAGALGLTYKQVQDWFVEQRRREKKKQNGVFVLPCSSSVGYNAVTNRNVKNQKKQKSHQELLTADYILKKMFRKGGPSLDEEFDSLPLGPSLHHVGLNNSFSAGQEYQRPSKRRKVSESAIGSHPGSNKKAPLRKHGIGKGLMTVWRATNPDAGDVPIGFGVGDKPRKTLTNAGRLKTKLPNARSKIQEKSKAFMQRRVDVSQNQPQKEKCELVLGRFITEEELDRTSFLIDDEELEMRELKAGPDTHMCSDHLASSGILGCSLCKDVLSKFPPDTVKMKKPICSQPWDSSQETVKKLFKVFHFLYTYATVVNICPFTLDEFAQAFHDKDSMLLGKIHVALLTLLLSDIEVELTSGFLPHLNKSCNFLALLHSVENREYSLDFWKRSLNPLTWIEILRQVLVAAGFGSKQGCWRREVLNKELNLLVKFGLCAGTLKGELFKILLAQGNNGSKVSELAKSMQIAELNLASTTEELESLICSTLSSDITLFEKISSSAYRLRMSSLKKDIDDIDDIRSDTEDSGSIDDEFNDSNTWISGDDFECDSRNSSLRKLKQANNSIMKNNMLTASTEIDESHPGEVWLLGLMESEYSDLSIEEKLNALVALTDLLSSGSSIRMKDPTKVSADYSSSIQLHGSGAKIKRSIVKKPGSYSNQIGPMRYVKEGHSSLNPHSYPMDSSLLISNIYSNKKSFEKVKEATKIGTNSHLIQSVFLGSDRRYNRYWLFLGPCNVGDPGHRRVYFESSEDGHWEVIDNEETLCSLLSVLDDRGKREALLVESLEKLKAPLCRAMSRMMVNHDGMCDTSNSDLDRITEDSYSPVSDVDNLSLIEMASDSLSSAGAVVIEAGKKGAEQMQKWIRLQAYDSWIWNSFYLNLNVVKYGRRSYIDSLARCESCHDLFWRDERHCKICHLTFELDFDLEERYAIHTATCRVKEDSRTFPNHKILPSKIQSLKAAIYAIESVMPVDALVGAWRKSAHKLWIRRLRRTSTSTELFQVVADFVGAMNEDWLFQCSFPESVVDKIIASFAFMPHTSSALALWLVKLDAIIAPYLDKVQPPKKQVITKRKFSGGV 1099
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g00943 1099 CDD homeodomain 4 58 IPR001356 GO:0003677
Accr1g00943 1099 ProSiteProfiles 'Homeobox' domain profile. 7 57 IPR001356 GO:0003677
Accr1g00943 1099 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 607 646 IPR028942 -
Accr1g00943 1099 ProSiteProfiles DDT domain profile. 323 382 IPR018501 -
Accr1g00943 1099 SUPERFAMILY Homeodomain-like 5 64 IPR009057 -
Accr1g00943 1099 Gene3D - 2 61 - -
Accr1g00943 1099 SMART testlast3 323 382 IPR018501 -
Accr1g00943 1099 Pfam Homeodomain 6 56 IPR001356 GO:0003677
Accr1g00943 1099 SMART HOX_1 2 61 IPR001356 GO:0003677
Accr1g00943 1099 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 738 811 IPR028941 -
Accr1g00943 1099 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 461 574 IPR044977 GO:0006357
Accr1g00943 1099 MobiDBLite consensus disorder prediction 132 166 - -
Accr1g00943 1099 Pfam DDT domain 324 379 IPR018501 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g00943 Accr-Chr1 23089184 23105957 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g00943 225 1090 Homeobox Transcription Factor Family AT1G28420 26.879 4.08e-77 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Accr1g00943 WSD 2.5e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g00943 - - gmx:100792062 1399.42