LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr1g00938	ATGGCGCATAGGTTGCTGAGGGACCATGAAGCAGATGGTTGGGAACGATCTGACTTTCCTATTATATGCGAATCATGTCTTGGTGACAACCCATATGTTCGTATGACAAAAGCTGAGTATGATAAGGAGTGTAAGATCTGTACACGACCCTTTACTGTTTTCCGATGGAGACCTGGTCGAGATGCAAGATATAAGAAAACTGAAATCTGCCAAACATGTAGTAAGTTGAAAAACGTTTGTCAAGTCTGCCTTCTGGATCTTGAGTACGGGTTACCAGTTCAAGTCAGAGATACGGCTCTCAGCATCAGTTCCCATGATGCCATTCCAAAGAGTGATGTTAATCGGGAGTATTTTGCTGAAGAACACGATCGCAAGACTAGAGCTGGCTTGGATTATGAATCCTCGTATGGGAAAGTACGTGCAAATGATACTATTTTGAAGCTTCAAAGGACAACACCATACTACAAAAGAAACCGGGCTCATATTTGCAGTTTCTACATAAGGGGTGAGTGTACCAGAGGAGCTGAATGCCCTTATAGGCATGAGATGCCAGTGACAGGGGAGTTGTCTCAACAAAATATCAAAGATCGTTATTATGGGGTCAACGATCCTGTGGCATTAAAGTTACTTGGCAAGGCAGGAGAGATGACCTCTCTGGAGCCTCCAGAGGATGAAACCATTAGAACTCTTTATGTTGGTGGGCTTGATGCTCGGGTCAGTGAGCAGGACCTACGTGATCACTTTTATGCCCATGGCGAAATAGAATCCATCAAGATGGTGCTCCAACGGGCTTGTGCTTTTGTAACCTACACAACCAGAGAAGGTGCAGAGAAAGCAGCAGAAGAGCTCTCCAACAAGCTAGTTATCAAGGGCCTAAGGTTGAAGCTAATGTGGGGTAGACCTCAGACGGCAAAACCTGAGTCTGAAAGTTCTGATCAAGCGAGGCAGCAGGCATCTGTGGCTCACAGTGGATTGTTGCCTCGAGCTGTCATATCACAGCAGCAGAGCCAGGATCAAACCCAGGGAGCTCATTACTATAACATTCCACCTCCTCCTCAGCAAGACAGAAGCTACTATCCATCAATGGATCCTCAGAGAATGGGTGCTGTTATTCCGTCCCAAGATGGTGGTCCTCCTGGTGGGGCCACTGTGACCGGAGAGAACAACAAACCCAATTTGGAGAAGCAGCAAATACAGCATTTTGCCCATCTAATGATGCCTCCGCCACCTGGACAATATCACCATCATCAGTATTATCCCCCTCCCCCGTATGGTTATATGCCACCTGTACCTGGTTATCAACAGTACCCACCCCCATACAACCCCAGGATGTCTACATCTCAGCCGCCAGCAGCAAACCAGCAATATCAGCAGTCCATGCAGCCGGGTTCATCTGCTGCTCCCTCTGGATCGGCACCAGCAGGATCAGGACCAGCTGGAGCTTCTGCACCTGCAGAAGCTGGAACATCAACCTCGGCCTCACAGTAG	1488	0.4792	MAHRLLRDHEADGWERSDFPIICESCLGDNPYVRMTKAEYDKECKICTRPFTVFRWRPGRDARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSISSHDAIPKSDVNREYFAEEHDRKTRAGLDYESSYGKVRANDTILKLQRTTPYYKRNRAHICSFYIRGECTRGAECPYRHEMPVTGELSQQNIKDRYYGVNDPVALKLLGKAGEMTSLEPPEDETIRTLYVGGLDARVSEQDLRDHFYAHGEIESIKMVLQRACAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGRPQTAKPESESSDQARQQASVAHSGLLPRAVISQQQSQDQTQGAHYYNIPPPPQQDRSYYPSMDPQRMGAVIPSQDGGPPGGATVTGENNKPNLEKQQIQHFAHLMMPPPPGQYHHHQYYPPPPYGYMPPVPGYQQYPPPYNPRMSTSQPPAANQQYQQSMQPGSSAAPSGSAPAGSGPAGASAPAEAGTSTSASQ	495

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr1g00938	495	ProSiteProfiles	Zinc finger C3H1-type profile.	157	184	IPR000571	GO:0046872
	Accr1g00938	495	Gene3D	-	212	311	IPR012677	-
	Accr1g00938	495	Gene3D	-	149	209	-	-
	Accr1g00938	495	MobiDBLite	consensus disorder prediction	328	347	-	-
	Accr1g00938	495	MobiDBLite	consensus disorder prediction	446	471	-	-
	Accr1g00938	495	SMART	rrm1_1	229	297	IPR000504	GO:0003723
	Accr1g00938	495	Pfam	Torus domain	143	194	IPR032297	-
	Accr1g00938	495	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	230	288	IPR000504	GO:0003723
	Accr1g00938	495	MobiDBLite	consensus disorder prediction	304	320	-	-
	Accr1g00938	495	MobiDBLite	consensus disorder prediction	301	389	-	-
	Accr1g00938	495	MobiDBLite	consensus disorder prediction	434	495	-	-
	Accr1g00938	495	PANTHER	PRE-MRNA-SPLICING FACTOR RBM22	1	378	IPR039171	GO:0003723
	Accr1g00938	495	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	228	301	IPR000504	GO:0003723
	Accr1g00938	495	SUPERFAMILY	RNA-binding domain, RBD	221	308	IPR035979	GO:0003676
	Accr1g00938	495	FunFam	Zinc finger CCCH domain-containing protein 4	149	208	-	-
	Accr1g00938	495	CDD	RRM_RBM22	227	300	-	-
	Accr1g00938	495	SMART	c3hfinal6	157	183	IPR000571	GO:0046872
	Accr1g00938	495	FunFam	Zinc finger CCCH domain-containing protein 40	213	309	-	-
	Accr1g00938	495	SUPERFAMILY	CCCH zinc finger	159	182	IPR036855	GO:0046872

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr1g00938	Accr-Chr1	22836533	22840784	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr1g00938	229	289	Eukaryotic Initiation Factors Gene Family	AT1G49760	34.848	5.50e-06	47.0

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr1g00938	K12872		-	gmx:100779917	773.467