Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g00922 ATGATGCTCGGTGAGTCCCATCACGCAAATCCGACGGTCCACGTTCCTCCTTGGCCCCTCCACCTTGATGATTTGACCTTGGATATTTGTTCTCCGTACCCGGTCAGTGGTGTTTCCGTCGACTCAGACGGTAATGCCAGCACCGGCGAGTACTCGCCGTTTCACGTGCAGGAGGCTTTCTCGGCGCTGCAGCGTTATCTACCCTCCAACGATGCTGATATCGACTCGGACTCCGATGTTCTTGGTCGGGACTCTGATGCTCCTGTCGATGCCTACTCCTGCGATCATTTTCGTATGTACGAGTTCAAGGTGAGGAAGTGCCCCCGTGGCAGGTCACATGACTGGACGGAATGTCCTTTTTCTCATCCAGGCGAGAAGGCTCGCCGAAGGGACCCGAGGAAGATTCTCTATTCGGGCACTGCATGCCCTGATTTTCGTAAAGGGAGCTGTAAGAAGGGGGAGTCTTGTGAGTTCGCTCATGGAGTATTTGAGTGTTGGCTTCACCCCTCTCGCTACCGTACGCAGCCTTGTAAGGATGGTACGAGCTGCCGGAGAAGGGTGTGCTTTTTTGCTCACACGCCGGAGCAACTCAGGATTCTTCATCCGCAGAGTCCAAGGAGTCCCAACTCAGCAGATTTATACGACGGCTCTCCGTTGAGGCAGGCGATGGAGTTATCTTCTAAAACTCTGCCGTTCATGTCATCTCCAACTTCGATATCACCCCCAGCTAGTTCTACGACGGAATCTCCTCCTGTGTCTCCGATGGCTGAGTCCCTGAGTCGTTCTGTTTGTTCGAGCACCATCAATGACACGGTGGCTTCTCTGCGTAATTTGCAGCTTGGTAAGGCCAAGTCTTTGTCGTTATCCTCTTCTTGGAATGTTCCTATGGGTTCTCCCAGCTTCGGGTCTCCGAGGGGATCCATGCTCCGACCCGGATTCTGCAGCCTCCCCACCACCCCTACGAAGGTGCCAACTCGCACCGGCGGCAGCTATTTTGATATTTGGGATCAGAGTTGTGAGGAGGAACCAGCGATGGAGCGGGTAGAGTCTGGTCGGAACATAAGGGCAAAGATGTTCGAGAAATTGAGCAAAGAGAATTCGCTGGACAGGTCGGATCCGGGTTCTTCGGGTGGGGCTCCAGATGTCGGGTGGATTTCGGAGCTGGTGAAGTAA 1173 0.5405 MMLGESHHANPTVHVPPWPLHLDDLTLDICSPYPVSGVSVDSDGNASTGEYSPFHVQEAFSALQRYLPSNDADIDSDSDVLGRDSDAPVDAYSCDHFRMYEFKVRKCPRGRSHDWTECPFSHPGEKARRRDPRKILYSGTACPDFRKGSCKKGESCEFAHGVFECWLHPSRYRTQPCKDGTSCRRRVCFFAHTPEQLRILHPQSPRSPNSADLYDGSPLRQAMELSSKTLPFMSSPTSISPPASSTTESPPVSPMAESLSRSVCSSTINDTVASLRNLQLGKAKSLSLSSSWNVPMGSPSFGSPRGSMLRPGFCSLPTTPTKVPTRTGGSYFDIWDQSCEEEPAMERVESGRNIRAKMFEKLSKENSLDRSDPGSSGGAPDVGWISELVK 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g00922 390 FunFam Zinc finger CCCH domain-containing protein 66 94 162 - -
Accr1g00922 390 PANTHER UNKEMPT FAMILY MEMBER 52 390 IPR045234 -
Accr1g00922 390 ProSiteProfiles Zinc finger C3H1-type profile. 136 163 IPR000571 GO:0046872
Accr1g00922 390 SMART c3hfinal6 136 162 IPR000571 GO:0046872
Accr1g00922 390 SMART c3hfinal6 171 194 IPR000571 GO:0046872
Accr1g00922 390 MobiDBLite consensus disorder prediction 231 258 - -
Accr1g00922 390 SUPERFAMILY CCCH zinc finger 136 165 IPR036855 GO:0046872
Accr1g00922 390 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 141 161 IPR000571 GO:0046872
Accr1g00922 390 Gene3D - 136 199 - -
Accr1g00922 390 MobiDBLite consensus disorder prediction 364 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g00922 Accr-Chr1 22271327 22272499 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g00922 92 254 C2H2 Transcription Factor Family AT5G12850 54.167 1.71e-55 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Accr1g00922 zf-CCCH 4.5e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g00922 - - qsa:O6P43_003933 617.076