Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g00908 ATGATGAACAGTCTGAAGAAGAAGAAGAGCAGTGATCTGATAGACGCCAAGCTGGAAGAGCATCAGTTGTGTGGATCCAAGCAGTGTCCCGCTTGCGGACACAAGTTTCAATCCAAACCTGACTGGTTGGGTCTACCATCCGGAGTTAAATTCGATCCAACAGACCAAGAACTGATTGAACACCTCGAAGCCAAAGTTGAATCCAAGCAACACATGAAATCTCACCCTCTCATCGATGAGTTCATCCCCACCATTGAAGGCGAGGACGGAATCTGCTACACCCATCCCGAGAAACTCCCCGGAGTAACGAGGGATGGGTTGAGCAGGCACTTTTTTCACAGGCCATCGAAGGCGTATACGACGGGGACAAGGAAGAGAAGGAAGATCCAGAACGAGTGTGAAAACTTACAACAAGGAGGAGGAGGAGCAGGAGGAGGAGAAACCAGATGGCACAAAACTGGGAAAACCAGGCCAGTTCTGGTAAATGGAAAGCAAAAAGGCTGCAAGAAAATCCTCGTACTCTACACCAACTTTGGTAAGAACAGAAAGCCTGAGAAGACCAATTGGGTTATGCATCAGTACCATTTGGGACAACATGAGGAAGAGAAAGAAGGCGAACTTGTCGTCTCCAAGATCTTCTTCCAGACACAGCCCAGACAATGCACAACAACCAACAACCCAAACAATGTTGTTGTTAATACTAATAATAATAATACTAATTGGTCGGAAAGGAGCGCCACGACCGGCGAAGAAGCGAGCGGAGATCAGCCGAATAGTAATAGTAGAAGAGAGAGTACAAGTGGAAGTTGTTCTTCTAAAGAAATATTCACTCATGACGTCTCTACTGTTACTGTTCCTGTTCCACCTCCTCCGCCATTAACGTCCTTCACTGCTTCTGCTTTGGATATTCATCATCAGCAACACCTCAAATCCGACCATTTCAGCTTCATTCCATTCAGGAAAAGCTTCGATGAGGTGGGAATTGGAGAAGTTTCAAGAAGAAGAGAAGTAGTGCAAGCTTCAGGTTCATCAGCAGAAGAAGTGAATCATCATCATCATCAACAACAACAGATTACAGCAAATTCTTCAGCATTTCATATGATCAATAGGCCTTCAATTCCTATTTCCACCATTATCTCTCCACCTCCTCCTTCACACCATCACACCTCCATCATGCTTGATGATGTCACCAGATTGATGCTCCAAAATGATCATTTCCAGCAACAACATCTTAAACTAGAAGGAAGGTCTGCTTCTGGCTTGGAGGAACTCATTATGGGATGCACTTCAACCAATTCCAAAGAGGAGTCATCTATCACACATTATCCACAGGACGCAGAATGGTTGAAGTATTCTTCATACTGGCCTGATTCTGACAATCCAGGTCATCATCATCATGGTTAG 1404 0.4487 MMNSLKKKKSSDLIDAKLEEHQLCGSKQCPACGHKFQSKPDWLGLPSGVKFDPTDQELIEHLEAKVESKQHMKSHPLIDEFIPTIEGEDGICYTHPEKLPGVTRDGLSRHFFHRPSKAYTTGTRKRRKIQNECENLQQGGGGAGGGETRWHKTGKTRPVLVNGKQKGCKKILVLYTNFGKNRKPEKTNWVMHQYHLGQHEEEKEGELVVSKIFFQTQPRQCTTTNNPNNVVVNTNNNNTNWSERSATTGEEASGDQPNSNSRRESTSGSCSSKEIFTHDVSTVTVPVPPPPPLTSFTASALDIHHQQHLKSDHFSFIPFRKSFDEVGIGEVSRRREVVQASGSSAEEVNHHHHQQQQITANSSAFHMINRPSIPISTIISPPPPSHHHTSIMLDDVTRLMLQNDHFQQQHLKLEGRSASGLEELIMGCTSTNSKEESSITHYPQDAEWLKYSSYWPDSDNPGHHHHG 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g00908 467 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 7 346 IPR044799 GO:0003700
Accr1g00908 467 FunFam NAC domain-containing protein 73 54 219 - -
Accr1g00908 467 SUPERFAMILY NAC domain 40 215 IPR036093 GO:0003677|GO:0006355
Accr1g00908 467 Pfam No apical meristem (NAM) protein 46 196 IPR003441 GO:0003677|GO:0006355
Accr1g00908 467 MobiDBLite consensus disorder prediction 220 274 - -
Accr1g00908 467 Gene3D NAC domain 54 219 IPR036093 GO:0003677|GO:0006355
Accr1g00908 467 MobiDBLite consensus disorder prediction 135 156 - -
Accr1g00908 467 ProSiteProfiles NAC domain profile. 45 215 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g00908 Accr-Chr1 20705235 20708669 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g00908 7 455 NAC Transcription Factor Family AT5G56620 49.153 1.01e-130 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Accr1g00908 NAM 5.7e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g00908 - - gmx:100791884 614.379