Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Accr1g00892 | ATGGGAAGAGCGACAAGGTGGTTGAAGGGGTTGTTTGGGATGAAGAAAGACAGAGACAAAAAACAGAATTCAAACTCCGACCACCGTGGCAACTTGAAATCTGCGGCGGCGCGGTCGGCGGCACCACCACTCAATCATCTTTCACCTGCAGAGGCTGCTTGGCTTCAATCATTCTACGGAGAAACAGAGGACCAGCAGAATAAGCATGCCATTGAGGTTGCTGCAGCCACCGCCGCAGCAGCCGACGCCGCCGTGGCTGCCGCCCAGGCGGCAGCGGCCGTAGTGAGGCTGACGAGTCACAGCAGAACCACCACCATGTTCGGCCGTGGACACGAGAAATTGGCGGCCGTCAAGATTCAAACAGTATTCAGGGGATTCTTGGCAAGGAAGGCATTAAGAGCCCTGAAAGGATTAGTGAAGATTCAAGCACTGGTAAGAGGATTTCTAGTTCGAAAGCAAGCAACTGCAACACTACACAGCATGCAAGCTCTGATTAGAGCTCAAGCCACGGTTCGATCTCATAAAGCTCTTCTAGTCATGAACAAAAACGAAGAATCATGCAAATTTGAAACTCAGCCTCGAAGATCCACGGAGAGATTCGAAGAAAGTAGGAGATTATCTTCTTCCTTCGACGCTTCCATGAATAACAACACTAACAGTACTGATGGGAGTCCGACACCGAAGATAGTGGAGGTGGACACCGGCGGCTGCCGGCTGAAGTCAAGGTCTCGCCGGAGCAACACATCAATGTCGGATTTTGGCGACGACCCATTATTTCAAGCAATGTCTTCTCCACTACCAGTTCCACAAATTCGAACCCCAGCTCGGATATCAACGGCGGCAGATCGGAGGGTTTTGCCGGAGTCAGAGTGGGGACTAACAGGGGAAGAATATAAGTTCTCCACAGCCCAGAGCACTCCACGTTTCACCAATTCATGTTCATGTGGATCACTCGCCGCCACACCCAAGAGTGTCTATGCAGAAAGATTGGTGTGGCAATATGGAAACTATCCTAATTATATGGCGAATACTCAGTCTTCGAAGGCGAAACTGAGGTCTCGCAGTGCTCCGAAGCAGCGGCCAGAGTCCTCCGGCGGCGGGGCGAAGAAGAGGCTTTCGTTGAATGAAGTGATGGAGTCTAGGAGTAGTTTGAGTGGGATTAGGATGCAGAGGACTTGTTCGAAAGTTCAGGAAGCCATTAATTTCAAGAATGCTGTGATGGGGAAGATTGAGAAATCTGGGGAGATCGGGAGAGATAGTTACTACTTGCAGAGGAGGTGGTATGGTGAATGA | 1293 | 0.5066 | MGRATRWLKGLFGMKKDRDKKQNSNSDHRGNLKSAAARSAAPPLNHLSPAEAAWLQSFYGETEDQQNKHAIEVAAATAAAADAAVAAAQAAAAVVRLTSHSRTTTMFGRGHEKLAAVKIQTVFRGFLARKALRALKGLVKIQALVRGFLVRKQATATLHSMQALIRAQATVRSHKALLVMNKNEESCKFETQPRRSTERFEESRRLSSSFDASMNNNTNSTDGSPTPKIVEVDTGGCRLKSRSRRSNTSMSDFGDDPLFQAMSSPLPVPQIRTPARISTAADRRVLPESEWGLTGEEYKFSTAQSTPRFTNSCSCGSLAATPKSVYAERLVWQYGNYPNYMANTQSSKAKLRSRSAPKQRPESSGGGAKKRLSLNEVMESRSSLSGIRMQRTCSKVQEAINFKNAVMGKIEKSGEIGRDSYYLQRRWYGE | 430 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Accr1g00892 | 430 | MobiDBLite | consensus disorder prediction | 10 | 27 | - | - | |
| Accr1g00892 | 430 | Gene3D | - | 111 | 162 | - | - | |
| Accr1g00892 | 430 | MobiDBLite | consensus disorder prediction | 186 | 232 | - | - | |
| Accr1g00892 | 430 | MobiDBLite | consensus disorder prediction | 345 | 375 | - | - | |
| Accr1g00892 | 430 | ProSiteProfiles | IQ motif profile. | 112 | 140 | IPR000048 | GO:0005515 | |
| Accr1g00892 | 430 | SMART | iq_5 | 111 | 133 | IPR000048 | GO:0005515 | |
| Accr1g00892 | 430 | SMART | iq_5 | 134 | 155 | IPR000048 | GO:0005515 | |
| Accr1g00892 | 430 | MobiDBLite | consensus disorder prediction | 9 | 42 | - | - | |
| Accr1g00892 | 430 | Pfam | Protein of unknown function (DUF4005) | 306 | 394 | IPR025064 | - | |
| Accr1g00892 | 430 | MobiDBLite | consensus disorder prediction | 207 | 227 | - | - | |
| Accr1g00892 | 430 | PANTHER | IQ-DOMAIN 5-RELATED | 1 | 379 | - | - | |
| Accr1g00892 | 430 | Pfam | IQ calmodulin-binding motif | 115 | 133 | IPR000048 | GO:0005515 | |
| Accr1g00892 | 430 | Pfam | IQ calmodulin-binding motif | 139 | 153 | IPR000048 | GO:0005515 | |
| Accr1g00892 | 430 | ProSiteProfiles | IQ motif profile. | 136 | 163 | IPR000048 | GO:0005515 | |
| Accr1g00892 | 430 | MobiDBLite | consensus disorder prediction | 187 | 206 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Accr1g00892 | Accr-Chr1 | 20051893 | 20053349 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Accr1g00892 | 1 | 389 | IQD Protein Family | AT3G16490 | 48.010 | 6.06e-87 | 268 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Accr1g00892 | - | - | gsj:114424287 | 452.981 |