Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g00888 ATGCCATACTACTTATACTCCATTTTCTTCTTCTTCTTACTGAGTGATGCTGAGACTAATAATAAGTCTCAGCTGTATGATCAAGAACATACAGTCCTACTTAACTTGAAACAAAACCTTCATCCATTCCTCAATCAGTGGGTCCCACCGAATTCCTCTCATTGTTCTTGGCCTGGGATCGACTGCACCGATGGCTCTGTCACAAAACTAAATTTTAGTAACATGAACATCGACAAAACCATACCTCCTTTCATCTGTGACCTCAAAAATCTCACCTTTATTGATTTTCAGTTTAATTATTTTTCTGGAGAGTTCCCAAAATTTCTCTATGATTGCCCGAAGCTTGAGTACCTTGACCTCTCCCAGAACAACTTCGTGGGTCCCATTCCAAACGACGTTGACCGATTGGCCAACCTGCGTTTCCTTAATCTCGCCGCCAACTATTTCTCCGGCGACATCCCGGCGAGCATAGGAAGGTTGAAGGAGCTCAGAAATCTCCAACTTTACTTTTGTAGTTTTAACGGCAGTATCCCAGATGAAATAGGCGACTTGTCCAATCTTGAATTGTTAGATCTGCGCCTAATCACCAATCTTCCTCCTACACAGTTTCCGGCGAGCTTCACCAAGTTGAAAAAAGTGAAGACCTTTAGGATGAACTCCATGAATTTGATTAAGAAAATTCCAGAAAGTATTCGGGAAATGGTGAGTTTGGAGGAATTGGATTTATCGAATAATAGCTTAAACGGGCAAATCCCCAGTAGTTTGTTTGCTCTGAAGAATCTAAGCATATTGTATCTTTGGAACAATAGACTATCTGGGGAAATACCTACAGAAATTGAAGCTCTGAATCTGACTGTGCTGGATGTTTCAGAGAATTTTCTCACTGGAACAATCCCAGATGGTTTAGGGAAGCTCAAAAAGCTAACAGGTTTGAGTCTGCAAATGAATCAACTATCAGGAGAGATACCGGAAAGCCTTGCTTATCTGCCAGCTCTAGTGGATTTCGTGGTTTTTCAAAACAGTCTATCAGGTACTCTGCCTCCTTACTTTGGTCGTTATATGCCACTCGAAACCTTTCAGGTTGCAACCAATAGATTGACAGGAAACTTGCCAGAGGATTTATGTTACAATGGCAAGTTAGTTGGAGTAAGTGCTTATGACAACGATCAAAGTGGGGAGCTGTCAGAATCATTAGGAAGCTGCAACAGTAGCCTGCAATACTTGTTTCTTCAAAATAATAGTTTTTCAGGCAAAATCCCCGCAGGCCTTTGGACGTCATATCATTTGTTGGTTTTAATGATCAACCGCAACAAGTTCACCGGCGAGCTACCTCAAAGATTGGCTGGTAGTCTTTCAAGTTTGATCATAAGCAACAATCAATTCTCTGGTAGAATACCAGTAGGAGTATCTACCTTGAAGAATCTGGTCTTGTTTGAAGCTAGTAAGAATCTCTTCAATGGGAGTATTCCACAAGAGTTAACCACACTTCCTAAGCTATTGAAGTTGTTGCTTGATCAAAACCAGCTAACAGGTCCACTTCCATTCTTATCTTTGGAAAGTTTGGAATCTCTCACAGCTCTAAATTTGAGCCACAACCAACTCTCTGGACCAATCCCAGATTTTACTGATTTACCCAATCTATTAAAACTAGACCTGTCAAATAATCAGCTCTCCGGTCGTATTCCACCTCAACTTGGTAAATTGTCAATGACCCTGACAAACCTCAATTTCTCCTCCAATCTCTTCAGAGGGAAGATTCCTAGTGAATTTGAAAATCCTGGCTATTATTCTGATAGCTTTCTAAACAATTCTGGCCTCTGTGCTGATACCAAAAAGCTAAACCTTCCCTTGTGCAATTCCGGTTCTGACCTTCAAATTGAAAGGTTAAGAAAGAGATCATCTGCATCTCTTGCTTTGATCATAGGCCTAGTGATTGTGGCTTCCTTAGCAGATTTCTTGGTTTTGTTCTTCATTGTTAGATTATGCAAATCAAGAAAACAAGAATTGGATAATTCATGGAAGTTGACTTCCTTCCAGCGGCTAAGTTTCTCAGAAATGAACATTGTGTCATCTTTGACGGATGATAATATTATAGGCAGAGGTGGGTATGGTACGGTATACCAAGTCCCCGTAGATGGTTTAGGCTACGTCGCTGTGAAGAAGATATTCAGTAACAAGAAGTGGGAGCAGAAACTTGAGGATGCCTTCCTAGCAGAAGTTAAGATTTTGAGCAACATTCGTCACAACAATATTGTGAAGCTGTTGTGTTGCATGTCAAATGATGATTCCCAGCTTCTTGTGTATCAATATCTAGAAAAGAACAGCCTCGATCGCTGGCTGAACAAGAAGAATAGGTTAAACCGTAATTTTGTCCTTGATTGGCCAAAAAGATTGCAGATAGCCATTGGAGCTGCTCAAGGTCTGACCTATATGCACCATGATTGCCCGCATCCCGTTGTTCATCGTGATATTAAAACAAGTAACATCCTTTTGGATTCTGAATTCAATGCAAAAGTTGCAGACTTTGGTCTAGCAAGAATATTGATAGAGTCAAGCGAACTCACCATGTCAGGTGTAGTTGGATCATTCGGCTATATTGCTCCAGAATATATTCAAACAAGGAAAATCAATGAAAAGATCGATGTTTATAGTTTTGGAGTGGTGTTGCTGGAACTCACAACTGGGAAGGAAGCGAACTGTGGAGATGAACACTCGTCTCTTGCAGAATGGGCATGGCGACATGTGCAGCTGGGCAGAGATGTAGAGGAAGTTCTAGACAAGGAAATTAATGAAGCATGCTATATGGATGAAATATGCTGCGTGTTCAAACTTGGGGTGATGTGTACTGCAATACTGCCAACTAGTAGGCCTTCCATGAAGGAGGTTCTGCAAGCACTGCTTCGTTGCAGGGACCCGTACGGTTTTGGACAAAGGAGTCCTGGAGCCTTTGATTTTGTTCCCCTCCTGAAGAATTCCAAGAGGGAAAGTAGATTGGATATTGATGATGATTTATAG 3015 0.4123 MPYYLYSIFFFFLLSDAETNNKSQLYDQEHTVLLNLKQNLHPFLNQWVPPNSSHCSWPGIDCTDGSVTKLNFSNMNIDKTIPPFICDLKNLTFIDFQFNYFSGEFPKFLYDCPKLEYLDLSQNNFVGPIPNDVDRLANLRFLNLAANYFSGDIPASIGRLKELRNLQLYFCSFNGSIPDEIGDLSNLELLDLRLITNLPPTQFPASFTKLKKVKTFRMNSMNLIKKIPESIREMVSLEELDLSNNSLNGQIPSSLFALKNLSILYLWNNRLSGEIPTEIEALNLTVLDVSENFLTGTIPDGLGKLKKLTGLSLQMNQLSGEIPESLAYLPALVDFVVFQNSLSGTLPPYFGRYMPLETFQVATNRLTGNLPEDLCYNGKLVGVSAYDNDQSGELSESLGSCNSSLQYLFLQNNSFSGKIPAGLWTSYHLLVLMINRNKFTGELPQRLAGSLSSLIISNNQFSGRIPVGVSTLKNLVLFEASKNLFNGSIPQELTTLPKLLKLLLDQNQLTGPLPFLSLESLESLTALNLSHNQLSGPIPDFTDLPNLLKLDLSNNQLSGRIPPQLGKLSMTLTNLNFSSNLFRGKIPSEFENPGYYSDSFLNNSGLCADTKKLNLPLCNSGSDLQIERLRKRSSASLALIIGLVIVASLADFLVLFFIVRLCKSRKQELDNSWKLTSFQRLSFSEMNIVSSLTDDNIIGRGGYGTVYQVPVDGLGYVAVKKIFSNKKWEQKLEDAFLAEVKILSNIRHNNIVKLLCCMSNDDSQLLVYQYLEKNSLDRWLNKKNRLNRNFVLDWPKRLQIAIGAAQGLTYMHHDCPHPVVHRDIKTSNILLDSEFNAKVADFGLARILIESSELTMSGVVGSFGYIAPEYIQTRKINEKIDVYSFGVVLLELTTGKEANCGDEHSSLAEWAWRHVQLGRDVEEVLDKEINEACYMDEICCVFKLGVMCTAILPTSRPSMKEVLQALLRCRDPYGFGQRSPGAFDFVPLLKNSKRESRLDIDDDL 1004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g00888 1004 PRINTS Leucine-rich repeat signature 544 557 - -
Accr1g00888 1004 PRINTS Leucine-rich repeat signature 237 250 - -
Accr1g00888 1004 CDD STKc_IRAK 698 968 - -
Accr1g00888 1004 Gene3D Phosphorylase Kinase; domain 1 663 770 - -
Accr1g00888 1004 Gene3D Ribonuclease Inhibitor 518 607 IPR032675 -
Accr1g00888 1004 SMART serkin_6 692 973 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr1g00888 1004 SUPERFAMILY L domain-like 43 390 - -
Accr1g00888 1004 ProSitePatterns Protein kinases ATP-binding region signature. 698 721 IPR017441 GO:0005524
Accr1g00888 1004 Pfam Leucine Rich repeat 523 536 IPR001611 GO:0005515
Accr1g00888 1004 SUPERFAMILY Protein kinase-like (PK-like) 684 967 IPR011009 -
Accr1g00888 1004 ProSiteProfiles Protein kinase domain profile. 692 974 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr1g00888 1004 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 197 961 - -
Accr1g00888 1004 Gene3D Ribonuclease Inhibitor 197 375 IPR032675 -
Accr1g00888 1004 Gene3D Ribonuclease Inhibitor 137 196 IPR032675 -
Accr1g00888 1004 SUPERFAMILY RNI-like 287 592 - -
Accr1g00888 1004 FunFam Leucine-rich repeat receptor-like protein kinase TDR 302 620 - -
Accr1g00888 1004 FunFam Receptor-like protein kinase HSL1 isoform A 26 175 - -
Accr1g00888 1004 Pfam Protein kinase domain 694 964 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr1g00888 1004 Gene3D Ribonuclease Inhibitor 449 517 IPR032675 -
Accr1g00888 1004 Gene3D Ribonuclease Inhibitor 376 448 IPR032675 -
Accr1g00888 1004 Gene3D Ribonuclease Inhibitor 28 136 IPR032675 -
Accr1g00888 1004 Gene3D Transferase(Phosphotransferase) domain 1 771 974 - -
Accr1g00888 1004 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 191 275 - -
Accr1g00888 1004 Pfam Leucine Rich Repeat 236 255 IPR001611 GO:0005515
Accr1g00888 1004 Pfam Leucine rich repeat N-terminal domain 28 62 IPR013210 -
Accr1g00888 1004 ProSiteProfiles Leucine-rich repeat profile. 523 545 IPR001611 GO:0005515
Accr1g00888 1004 FunFam Kinase family with leucine-rich repeat domain-containing protein 771 979 - -
Accr1g00888 1004 Pfam Leucine rich repeat 90 148 IPR001611 GO:0005515
Accr1g00888 1004 ProSitePatterns Serine/Threonine protein kinases active-site signature. 819 831 IPR008271 GO:0004672|GO:0006468
Accr1g00888 1004 SMART LRR_typ_2 521 543 IPR003591 -
Accr1g00888 1004 SMART LRR_typ_2 136 160 IPR003591 -
Accr1g00888 1004 SMART LRR_typ_2 184 205 IPR003591 -
Accr1g00888 1004 SMART LRR_typ_2 234 258 IPR003591 -
Accr1g00888 1004 SMART LRR_typ_2 544 568 IPR003591 -
Accr1g00888 1004 SMART LRR_typ_2 305 329 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g00888 Accr-Chr1 19955211 19958318 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g00888 23 1004 Receptor kinase-like Gene Family AT5G25930 50.350 0.0 889
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Accr1g00888 Pkinase 2.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g00888 - - gmx:100785907 1174.84