Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g00885 ATGCCATACTACTTATACTCCGTTTTCTTCTTCTTCTTTGTACTGAGTGATGCCGAGACTAATAATAAGTCTCAGCTGTATGATCAAGAACAAACAGTCCTACTTAACTTGAAACAACACCTTCATCCATTCCTCAATCAGTGGGTCCCACCGAATTCCTCTCATTGTTCTTGGCCTGGGATCGACTGCACCGATGGCTCTGTCACAAAACTAGATTTTGGTGACATGAACATCACCAAAACCATACCTCCTTTCATCTGTGACCTCAAAAATCTCACCTTTATTGATTTTCAGGTTAACTACTTTTCTGGGGCGTTCCCAAAATTTCTCTATGCTTGCCCCAAGCTTGAGTACCTTGACCTCTCCCAGAACAACTTTGTGGGTCAGATTCCAAACGACGTTGACCGATTGGCCAACCTGCGTTTCCTTAATCTTGCCGCCAACTATTTCTCCGGCGACATTCCGGCAAGCATAGGAAGGTTGAAGGAGCTGAGAAATCTCCAGCTTAATTCCTGTAGATTTAACGGCAGTATCCCAGATGAAATAGGCGACTTGTCCAATCTTGAATTCTTAGACCTGCACCAAAACACCAATCTTCCTCCTACACAGTTGCCGGCGAGCTTCACCGAGTTGAAAAAAGTGAAGACCTTTAGGATGGAATCCATGAATTTGATTGGGGAAATTCCAGAAAGTTTTGGGGAAATGGTGAGTTTGGAGGAATTGGATTTATCGGATAATCAGCTCTCCGGTCTTGTCCCACCTCAACTTGGCAAATTGTCAATTACCCTCAAACACCTCAATCTCTCCTCCAATCTTTTCACAGGGAAGATTCCTAGTGAATTTGGAAATCCTGTCTATTCTGATAGCTTTCTAAACAATTCTGGCCTCTGTGCGGATACCGAAAAGCTAAACCTTCCCTTGTGCAATTCCGGTTCTGACCTTCAAATTGAAAGGTTAAGAAAGAGATCATCTGCATCTCTTGCTTTGATCATAGTTCTAGCGATTGTGGCCTCCTTAGCAGCTTTCTTGGTTTTACTCTTGATTGTTAGATTATACAAATCAAGAAAGCAAGAATTGGATAATCCATGGAAGTTGACTTCCTTGCAGATGGCAAGTTTCTCAGAAATGAATATTGTGTCATCTTTGACAGATGATAATATTATAGGCAGAGGTGGGTATGGTACGGTATACCAAGTCCACGTAGATGGTTTAGGCTACGTTGCTGTGAAGAAGATATTAAGTAACAAGAAGTGGGAGCAGAAACTTGAGGATGCATTCCTAGCAGAAGTTAAGATTTTGAGAAACATTTGTCACAACAATATTGTGAAGCTGTTGTCTTTCATGTCACATGATGATTCCATGCTTCTTGTGTATGAATATCTAGAAAACAGTAGCCTTGATCGCTGGCTGAAGAAGGAGAATAGGTTAAACCATAAATTTGTCCTTGATTGGCCGAAAAGATCGCATATAGCCATTGGAGCTGCACAAGGTCTGACCTATATGCACCATGATTGCCCACGTCCCGTTGTTCATCGTGATATTAAAACAAGTAACATCCTTTTGGATTCTGAATTCAATGCAAAAGTTGGAGACTTTGGTCTAGCAAGAATAATGGTCAAGCCAAGCGAACTCACCGTGTCAGGTGTAGTTGGATCATTCGGCTATATTGCTCCAGAATATATTCAAACAACGAAAATCAATGAAAAGAGCGATGTGTATAGTTTTGGAGTGGTGTTGCTGGAGCTTACAACTGGGAAGGAAGCGACCCGTGGAGATGAACACTCGTCTCTTGCAGAATGGGCATCGCGACATATGCAGCTGGGCGGAGATATCGAGGAAGTTCTAGACAAGGAAATTATGGAAGTGTGTTATATGGATGAAATATGCCGTGTCTTCAAACTTGGGGTGATGTGTACTGCAATGCTGCCAGCTAGTAGGCCTTCCATGAAGGAGGTTCTGCAAATACTGCTTCGTCGCAGGGACTCGTAA 1989 0.4253 MPYYLYSVFFFFFVLSDAETNNKSQLYDQEQTVLLNLKQHLHPFLNQWVPPNSSHCSWPGIDCTDGSVTKLDFGDMNITKTIPPFICDLKNLTFIDFQVNYFSGAFPKFLYACPKLEYLDLSQNNFVGQIPNDVDRLANLRFLNLAANYFSGDIPASIGRLKELRNLQLNSCRFNGSIPDEIGDLSNLEFLDLHQNTNLPPTQLPASFTELKKVKTFRMESMNLIGEIPESFGEMVSLEELDLSDNQLSGLVPPQLGKLSITLKHLNLSSNLFTGKIPSEFGNPVYSDSFLNNSGLCADTEKLNLPLCNSGSDLQIERLRKRSSASLALIIVLAIVASLAAFLVLLLIVRLYKSRKQELDNPWKLTSLQMASFSEMNIVSSLTDDNIIGRGGYGTVYQVHVDGLGYVAVKKILSNKKWEQKLEDAFLAEVKILRNICHNNIVKLLSFMSHDDSMLLVYEYLENSSLDRWLKKENRLNHKFVLDWPKRSHIAIGAAQGLTYMHHDCPRPVVHRDIKTSNILLDSEFNAKVGDFGLARIMVKPSELTVSGVVGSFGYIAPEYIQTTKINEKSDVYSFGVVLLELTTGKEATRGDEHSSLAEWASRHMQLGGDIEEVLDKEIMEVCYMDEICRVFKLGVMCTAMLPASRPSMKEVLQILLRRRDS 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g00885 662 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 197 277 - -
Accr1g00885 662 ProSitePatterns Serine/Threonine protein kinases active-site signature. 509 521 IPR008271 GO:0004672|GO:0006468
Accr1g00885 662 Gene3D Transferase(Phosphotransferase) domain 1 461 662 - -
Accr1g00885 662 PANTHER UNNAMED PRODUCT 91 589 - -
Accr1g00885 662 ProSiteProfiles Leucine-rich repeat profile. 237 260 IPR001611 GO:0005515
Accr1g00885 662 Gene3D Ribonuclease Inhibitor 28 174 IPR032675 -
Accr1g00885 662 Gene3D Ribonuclease Inhibitor 175 306 IPR032675 -
Accr1g00885 662 Pfam Leucine rich repeat N-terminal domain 29 63 IPR013210 -
Accr1g00885 662 SUPERFAMILY Protein kinase-like (PK-like) 372 656 IPR011009 -
Accr1g00885 662 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 461 662 - -
Accr1g00885 662 ProSitePatterns Protein kinases ATP-binding region signature. 388 411 IPR017441 GO:0005524
Accr1g00885 662 SUPERFAMILY L domain-like 47 285 - -
Accr1g00885 662 Gene3D Phosphorylase Kinase; domain 1 352 460 - -
Accr1g00885 662 ProSiteProfiles Protein kinase domain profile. 382 657 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr1g00885 662 CDD STKc_IRAK 388 658 - -
Accr1g00885 662 Pfam Leucine Rich Repeat 263 283 IPR001611 GO:0005515
Accr1g00885 662 Pfam Leucine Rich Repeat 237 259 IPR001611 GO:0005515
Accr1g00885 662 Pfam Protein kinase domain 384 654 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr1g00885 662 Pfam Leucine rich repeat 92 149 IPR001611 GO:0005515
Accr1g00885 662 FunFam Receptor-like protein kinase HSL1 isoform A 27 176 - -
Accr1g00885 662 SMART serkin_6 382 657 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g00885 Accr-Chr1 19885120 19887201 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g00885 63 659 Receptor kinase-like Gene Family AT5G25930 44.845 9.88e-156 473
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Accr1g00885 Pkinase 7.5e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g00885 - - gmx:100785907 581.252