Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g00883 ATGCCATACTACTTATACTCCATTTTCTTCTTCTTCTTTGTACTGAGTGATGCTGAGACTAATAATAAGTCTCAGCTGTATGATCAAGAACATACAGTCCTACTTAAGTTGAAACAACACCTTCATCCATTCCTCAATCAGTGGGTCCCACCGAATTCCTCTCATTGTTCTTGGCCTGGGATCGACTGCACCGATGGCTCTGTCACAAAACTAAATTTTAGTAACGTGAACATCAACAAAACCATACCTCCTTTCATCTGTGACCTCAAAAATCTCACCTTTATTGATTTTCAGTTTAATTATTTTTCTGGGGAGTTCCCAAAATTTCTCTATGATTGCCCGAAGCTTGAGTACCTTGACCTCTCCCAGAACAACTTTGTGGGTCCCATTCCAAACGACGTTGACCGATTGGCCAACCTGCGTTTCCTTAATCTCGCCGCCAACTATTTCTCCGGCGACATCCCGGCGAGCATAGGAAGGTTGAAGGAGCTCAGAAATCTCCAACTTTACTTTTGTAGATTTAACGGCAGTATCCCAGATGAAATAGGCGACTTGTCCAATCTTGAATTCTTAGACCTGCGCCAAAACACCAATCTTCCTCCTACACAGTTGCCGGCGAGCTTCACCAAGTTGAAAAAAGTGAAGACCTTTAGGATGGGTTCCATGAATTTGATTGGGAAAATTCCAGAAAGTATTGGCGAAATGGTGAATTTGGAGGAATTGGATTTATCGGATAATGGCTTAGATGGGCAAATCCCCAGTAGTCTGTTTGCTCTGAAGAATCTAAGCATATTGTATCTTTGGAGAAATAGGCTATCTGGGGGAATACCTACAGAAATTGAAGCTCTGAATCTGATTGTACTGGATGTTTCACAGAATTTTCTTACTGGAAAAATCCCAGATGGTTTAGGGAAGCTCAAAAAGCTAACAGGTTTGAGTCTGCAAATGAATCAACTATCAGGAGAGATACCAGAAGGCCTTGCTCATCTGCCAGCTCTAGTGGATTTCATGGTTTTTCAAAACAGACTATCAGGTACTCTGCCCCCTTACTTTGGTCGTTATTCGCCACTCGAAACCTTTCAGGTTGCAACCAATAGATTGACAGGAAACTTGCCAGAGGATTTATGTTACAATGGCAAGTTAGTTGGAGTAAGTGCTTATGACAACGATCTAAGTGGGGAGCTGTCAGAATCATTAGGAAGCTGCAACAATAGCCTGCAATACTTGTTTCTTCAAAATAATAGTTTTTCAGGCAAAATCCCTGCAGGCCTTTGGACGTCATATCATTTGGTGTCTTTAACGATCAACAGCAACAAGTTCACCGGCGAGCTACCTCAAAGATTGGCTTGGAACCTTTCAAGTTTGATCATAAGCAACAATCAATTCTCTGGTAGAATACCAGTAGGAGTATCTACCTGGAAGAATCTGGTCAAGTTTGAAGCTAGTAAGAATCTCTTCAGTGGGAGTATGCCACAAGAGCTAACCACTCTTCCTAAGCTAATAAATTTGTATCTTGATCAAAACCAGCTAACAGGTCCACTTCCATCAGAAATCATATCTTGGAACTCTCTCAGTGCTCTAAAATTGAGCCACAATCAACTCTCTGGACCAATCCCAGATTCTATTGATCGTTTATCCCACCTATCACAACTAGACCTATCAAATAATCAGCTCTCTGGTCGTATTCCACCTCAACTTGGTAAATTGTCAATGACCCTCACAAACCTCAATCTCTCCTCCAATCTTTTCAAAGGGAAGATTCCTAGTGAATTTGGAAATCCCGTCTATTCTGATAGCTTTCTAAACAATTCTGGCCTCTGTGCGGATACCGAAAAGCTAAACCTTCCCTTGTGCAATTCCGGTTCTAACCTTCAAATTGAAAGGTTAAGAAAGAGATCATCTGCATCTCTTCCTTTGATAATAGTTCTAGTGATTGTGGCCTCCTTAGCAGCTTTCATGGTTTTACACTTGATTGTTAGATTATACAAATCAAGAAAGCAAGAATTGGATAATTCATGGAAGTTGACTTCCTTCCAGAGGGTAAGTTTCTCAGAAATGAACATTGTGTCGTCTTTGACAGATGATAATATTATAGGCAGAGGTGGGTATGGTACGGTACACCAAGTCCCCGTAGATGGTTTAGGCTACGTCGCTGTGAAGAAGATATTCAGTAACAAGAAGTGGGAGCAGAAACTTGAGGATGCATTCCTAGCAGAAGTTAAGATTTTGAGCGACATTCGTCACAACAATATTGTGAAGCTGCTGTGTTGCATGTCAAATGATGATTCCATGCTTCTTGTGTATGAATATCTAGAAAACAACAGCCTTGATCGCTGGCTGATCAAGAAGAATAGGTTAAACCATAATTTTGTCCTCGATTGGCCGAAAAGATTGCAGATAGCCATTGGAGCGGCGCAAGGTCTGACCTATATGCACCATGATTGCCCACATCCCGTCGTTCACCGTGATATTAAAACAAGTAACATCCTTTTGGATTCTGAATTCAATGCAAAAGTTGCAGACTTTGGTCTAGCAAGAATATTGATCAAGCCAAGCGAACTCACCATGTCAGGTGTAGCTGGATCATTCGGCTATATTGCTCCAGAATATATTCAAACAACGAAAATCAACGAAAAGATCGATGTGTATAGTTTTGGAGTGGTGTTGCTGGAACTTACAACTGGGAAGGAAGCAAACCGTGGAGATGAACACTCGTCTCTTGCAGAATGGGCATGGCGACATGTGCAGCTGGGTGGAGATGTAGAGGAAGTTCTAGACAAGGAAATTATGGAAGCATGCTATATGGATGAAATATGCTGCGTCTTCAAACTTGGGGTGATGTGTACTGCAATACTGCCAGCTAGTAGGCCTTCCATGAAGGAGGTTCTGCAAGCACTGCTTCGTTGCAGGGACCCGTACGGTTTTGGACAAAGGAGTCCTGGAGTCGTTGATTTTGTTCCCCTCCTGAAGAATTCTAAGAGGGAACGTAGATTGGGTATTGATGATGATTTATAG 3015 0.4189 MPYYLYSIFFFFFVLSDAETNNKSQLYDQEHTVLLKLKQHLHPFLNQWVPPNSSHCSWPGIDCTDGSVTKLNFSNVNINKTIPPFICDLKNLTFIDFQFNYFSGEFPKFLYDCPKLEYLDLSQNNFVGPIPNDVDRLANLRFLNLAANYFSGDIPASIGRLKELRNLQLYFCRFNGSIPDEIGDLSNLEFLDLRQNTNLPPTQLPASFTKLKKVKTFRMGSMNLIGKIPESIGEMVNLEELDLSDNGLDGQIPSSLFALKNLSILYLWRNRLSGGIPTEIEALNLIVLDVSQNFLTGKIPDGLGKLKKLTGLSLQMNQLSGEIPEGLAHLPALVDFMVFQNRLSGTLPPYFGRYSPLETFQVATNRLTGNLPEDLCYNGKLVGVSAYDNDLSGELSESLGSCNNSLQYLFLQNNSFSGKIPAGLWTSYHLVSLTINSNKFTGELPQRLAWNLSSLIISNNQFSGRIPVGVSTWKNLVKFEASKNLFSGSMPQELTTLPKLINLYLDQNQLTGPLPSEIISWNSLSALKLSHNQLSGPIPDSIDRLSHLSQLDLSNNQLSGRIPPQLGKLSMTLTNLNLSSNLFKGKIPSEFGNPVYSDSFLNNSGLCADTEKLNLPLCNSGSNLQIERLRKRSSASLPLIIVLVIVASLAAFMVLHLIVRLYKSRKQELDNSWKLTSFQRVSFSEMNIVSSLTDDNIIGRGGYGTVHQVPVDGLGYVAVKKIFSNKKWEQKLEDAFLAEVKILSDIRHNNIVKLLCCMSNDDSMLLVYEYLENNSLDRWLIKKNRLNHNFVLDWPKRLQIAIGAAQGLTYMHHDCPHPVVHRDIKTSNILLDSEFNAKVADFGLARILIKPSELTMSGVAGSFGYIAPEYIQTTKINEKIDVYSFGVVLLELTTGKEANRGDEHSSLAEWAWRHVQLGGDVEEVLDKEIMEACYMDEICCVFKLGVMCTAILPASRPSMKEVLQALLRCRDPYGFGQRSPGVVDFVPLLKNSKRERRLGIDDDL 1004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g00883 1004 FunFam Leucine-rich repeat receptor-like protein kinase TDR 303 620 - -
Accr1g00883 1004 SUPERFAMILY RNI-like 299 594 - -
Accr1g00883 1004 CDD STKc_IRAK 698 968 - -
Accr1g00883 1004 Gene3D Ribonuclease Inhibitor 357 623 IPR032675 -
Accr1g00883 1004 Pfam Protein kinase domain 694 964 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr1g00883 1004 Gene3D Ribonuclease Inhibitor 135 199 IPR032675 -
Accr1g00883 1004 FunFam Kinase family with leucine-rich repeat domain-containing protein 771 979 - -
Accr1g00883 1004 Gene3D Ribonuclease Inhibitor 200 352 IPR032675 -
Accr1g00883 1004 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 197 276 - -
Accr1g00883 1004 SUPERFAMILY Protein kinase-like (PK-like) 683 967 IPR011009 -
Accr1g00883 1004 Gene3D Transferase(Phosphotransferase) domain 1 771 974 - -
Accr1g00883 1004 FunFam Receptor-like protein kinase HSL1 isoform A 27 176 - -
Accr1g00883 1004 PANTHER RECEPTOR-LIKE PROTEIN 55 38 210 - -
Accr1g00883 1004 Gene3D Ribonuclease Inhibitor 29 134 IPR032675 -
Accr1g00883 1004 Pfam Leucine rich repeat 91 149 IPR001611 GO:0005515
Accr1g00883 1004 SMART serkin_6 692 973 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr1g00883 1004 SMART LRR_typ_2 545 569 IPR003591 -
Accr1g00883 1004 SMART LRR_typ_2 235 259 IPR003591 -
Accr1g00883 1004 SMART LRR_typ_2 497 521 IPR003591 -
Accr1g00883 1004 SMART LRR_typ_2 137 161 IPR003591 -
Accr1g00883 1004 SMART LRR_typ_2 306 330 IPR003591 -
Accr1g00883 1004 ProSiteProfiles Protein kinase domain profile. 692 974 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr1g00883 1004 SUPERFAMILY RNI-like 67 344 - -
Accr1g00883 1004 PRINTS Leucine-rich repeat signature 238 251 - -
Accr1g00883 1004 PRINTS Leucine-rich repeat signature 545 558 - -
Accr1g00883 1004 Gene3D Phosphorylase Kinase; domain 1 662 770 - -
Accr1g00883 1004 Pfam Leucine Rich Repeat 237 256 IPR001611 GO:0005515
Accr1g00883 1004 Pfam Leucine Rich Repeat 284 306 IPR001611 GO:0005515
Accr1g00883 1004 ProSitePatterns Protein kinases ATP-binding region signature. 698 721 IPR017441 GO:0005524
Accr1g00883 1004 ProSitePatterns Serine/Threonine protein kinases active-site signature. 819 831 IPR008271 GO:0004672|GO:0006468
Accr1g00883 1004 Pfam Leucine rich repeat N-terminal domain 29 63 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g00883 Accr-Chr1 19723368 19726475 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g00883 24 966 Receptor kinase-like Gene Family AT5G25930 52.659 0.0 934
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Accr1g00883 Pkinase 5.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g00883 - - gmx:100785907 1241.1