Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g00882 ATGAGAAATCCAACTCCATTGTTCTTCTTCTTCTACTTCCTTCTCTTCCTGAGCTGTGTGAATTCTAAGTTTGAACTCTATGCTCAAGAACATGAAGTTTTGCTTTGGATGAAACAGTACTTTAACGACCCATCTTCTCTCAGTCACTGGACAAATTCATCATCTCATTGTTCATGGTCTGAGATAACCTGCACCAATAACTCTGTTACAGGCCTGGCTCTGATCAACATCAATATAAGCCAACCTATACCAACTTTCATCTGTGAGCTTAAGAATCTCAGTTCAATTGATTTTCAATGGAATTACATTCCTCTGGAGTTCCCAACGTATCTCTACAATTGCTCCGAGCTGGAGTACTTGGACCTATCTAATAATTACTTTGTTGGTAAGGTTCCAGATGACATTGACCGTTTGGCCGGCCTGCGTTTTCTTAACCTTGGCGGTAACAACTTCTCCGGTGAGATTCCAGTGAGTGTCACCAAGTTAAAAGAGCTCACAAGTCTTCAGCTTAATCAATGTCTCTTCAATGGCACTATCCCAAGTGAAATAGGCAACTTATCCAATATTGAAGTCTTAAATTTGGGCTTTAACCTATTCTCACCTTCACAGTTTCCCTCTAGCTTCATGAAGCTCACCAAATTGAAGGATTTTGTGATGTCTTCCTGCAACTTGACCGGTGAAATCCCCGCAAGCATCAGGCAATTGGCGGACTTAGAGACATTGGATTTGTCCATGAATCAGTTAAGTGGCAAAATTCCAAGTAGTTTGTTTATGCTGAGGAATCTGAGCATTATGTTTCTTTCGAGGAATCAGCTTAATGGTGAGCTACCTCAAGTGATTGAAGCTTTAAACTTGACCATCGTTGATCTTGCTCAGAACAAGCTTACAGGGGAGATACCAAATGGCTTTGGGAATCTCCAGAAGCTAACTGGTTTGAACTTTGGTCTTAACCAATTATCAGGTGAGATTCCAGAAAGCTTAGGCCGTCTTCAATCTATAATAGACTTTAGTATCTTCTTCAACAATTTATCAGGGAATATTCCTCCAGAGTTTGGGCTCCATTCAAATCTTAGAAGATTTGAGATTGCTTCGAACAATTTCACGGGTAGTCTTCCTCAGAACTTGTGTTACCATGGAAATTTATTTAGATTAACAGCTTATGAAAATAAACTCAGTGGAGAATTACCAAAGTCACTTGGAAATTGTAGCAGCTTGCTAGAGTTGAAAGTCTACACTAACGAACTCTCAGGCGAAATTCCTAGTAGCCTTTGGGCGTCTCAGAATTTGTCAACTTTTATGATCAATGACAATAATTTCACAGGTGAGCTTCCTGAAAAATTGCCTGTGAATGTTTCACTCATGACAATTAGTTACAATCAGTTTTCTGGTAGAATCCCAGCGGGAATATCTTCCATGAAGAATCTGGTTGTGCTCAATGCAAGTAGAAACCTCTTTAATGGAAGTATCCCACAAGAGCTAACCAGTCTTTCTCAGCTAGCAACTTTGTTGCTTGATCAGAACAAACTTTCTGGGCCACTTCCATCTAAGATTGTATCATGGGAATCTCTGAGAACCCTAAACTTGAGCCAAAATCAACTCTCCGGCGAAATCCCTGATTCTATTGGTCATTTACTTGACCTTGCTCAACTGGATTTGTCAGAAAATAAACTCTCTGGCCAAATTCCATCTCAACTAGGCCTACCCTCTGTTCTCAACCTTTCCTGTAATCATTTGACTGGGAAGATTCCCAGTGAATTTGATAATCTTGCTTATGCCACCAGCTTTTTGAACAATTCTGGTCTATGTGCTGATACAGATGGATTAAACCTTAAATTGTGCAATTCTGGTTCTGTCCCTGAAAGTTCAAGCAAAGGCTCATCTTTTTCTGTTGGGTTGATCATAGGCCTTGTTGTAGTAGCCTGCATAGCAGTTTTCTTGTTATCACTTTTGATGATGAAATTCTACCAAAGGAGAAATCAAGAACTGGACACTTCATGGAAGTTAACTTCCTTCCAAAAGCTCAGTTTCACAGAATCAAACATCGTCTCATCCATGACGGATTATAACATCATCGGCAGTGGAGGGTACGGTACAGTGTACCGTATCGCCATCAACGACGATTTCGGCTATGTTGCAGTGAAGAAGATAAGCAACAATAGGAAGTTGAATCAGAAACTTGAGAACGCATTTATTACGGAAGTTAAAATCTTGGGCACAATTCGTCACATTAACATAGTGAAGTTGCTATGTTGCATGTCTAATGAGGATTCTCTGCTTCTTGTTTATGAGTATATGGAAAATCACAGTCTTGATAAGTGGCTACACAAGAAGATTAGTAATGGCCCTTCAAATGGCTTATCATCTGCCACAGTTCATAGTGTTTTTCTTGATTGGCCAAAGAGAATGCAAATAGCCATTGGGATTGCACAAGGTTTGAGCTACATGCATCATGACAGCTTACCGCCGATTATTCATCGCGATGTCAAAGCAAGTAATATTCTTTTGGATTCTCAGTTCAATGCAAAAGTAGCCGATTTTGGTCTTGCAAGGATGTTGATCAAACAAGGAGAACAAGATACCATGTCAGCTGTTGTTGGTTCTTTTGGTTACATTGCTCCAGAATATGCTCAAACGAAAAGAGTGAACGAAAAGGTTGATGTATATGGCTTTGGAGTGATCCTGCTTGAGCTGACAACAGGAAAAGAAGCCAACTATGGAGATGAACACTCGTCTCTTGCAGAATGGGCATGGCGTCAGATTCGATCAGGAAGCAACATAGAACAAGTTCTAGACGAAGATGTTAAGGAAACATTTTACTTGTCGGAAATGTGCAGTGTCTACAAGCTTGGGGTGATGTGTACAAGCAAAGAGCCAGCAAGTAGACCTTCCATGAAAGAGGCTCTGAATACATTGCTGCGCTTGAGAGATCCAGTTGGTTATGTAGAAATGAATTTTGGTCATTTTGAGGCTGTTCCTCTACTAAAGAATTCTAAAAGGGAGAGTAGGTTAGACATTGATGATAATGATAGCTAA 3033 0.4016 MRNPTPLFFFFYFLLFLSCVNSKFELYAQEHEVLLWMKQYFNDPSSLSHWTNSSSHCSWSEITCTNNSVTGLALININISQPIPTFICELKNLSSIDFQWNYIPLEFPTYLYNCSELEYLDLSNNYFVGKVPDDIDRLAGLRFLNLGGNNFSGEIPVSVTKLKELTSLQLNQCLFNGTIPSEIGNLSNIEVLNLGFNLFSPSQFPSSFMKLTKLKDFVMSSCNLTGEIPASIRQLADLETLDLSMNQLSGKIPSSLFMLRNLSIMFLSRNQLNGELPQVIEALNLTIVDLAQNKLTGEIPNGFGNLQKLTGLNFGLNQLSGEIPESLGRLQSIIDFSIFFNNLSGNIPPEFGLHSNLRRFEIASNNFTGSLPQNLCYHGNLFRLTAYENKLSGELPKSLGNCSSLLELKVYTNELSGEIPSSLWASQNLSTFMINDNNFTGELPEKLPVNVSLMTISYNQFSGRIPAGISSMKNLVVLNASRNLFNGSIPQELTSLSQLATLLLDQNKLSGPLPSKIVSWESLRTLNLSQNQLSGEIPDSIGHLLDLAQLDLSENKLSGQIPSQLGLPSVLNLSCNHLTGKIPSEFDNLAYATSFLNNSGLCADTDGLNLKLCNSGSVPESSSKGSSFSVGLIIGLVVVACIAVFLLSLLMMKFYQRRNQELDTSWKLTSFQKLSFTESNIVSSMTDYNIIGSGGYGTVYRIAINDDFGYVAVKKISNNRKLNQKLENAFITEVKILGTIRHINIVKLLCCMSNEDSLLLVYEYMENHSLDKWLHKKISNGPSNGLSSATVHSVFLDWPKRMQIAIGIAQGLSYMHHDSLPPIIHRDVKASNILLDSQFNAKVADFGLARMLIKQGEQDTMSAVVGSFGYIAPEYAQTKRVNEKVDVYGFGVILLELTTGKEANYGDEHSSLAEWAWRQIRSGSNIEQVLDEDVKETFYLSEMCSVYKLGVMCTSKEPASRPSMKEALNTLLRLRDPVGYVEMNFGHFEAVPLLKNSKRESRLDIDDNDS 1010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g00882 1010 SMART serkin_6 685 978 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr1g00882 1010 ProSiteProfiles Leucine-rich repeat profile. 522 544 IPR001611 GO:0005515
Accr1g00882 1010 Pfam Leucine Rich Repeat 522 544 IPR001611 GO:0005515
Accr1g00882 1010 SUPERFAMILY L domain-like 206 569 - -
Accr1g00882 1010 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 180 276 - -
Accr1g00882 1010 FunFam Receptor-like protein kinase HSL1 665 764 - -
Accr1g00882 1010 Gene3D Phosphorylase Kinase; domain 1 662 764 - -
Accr1g00882 1010 SUPERFAMILY Protein kinase-like (PK-like) 674 971 IPR011009 -
Accr1g00882 1010 SUPERFAMILY L domain-like 28 283 - -
Accr1g00882 1010 Gene3D Ribonuclease Inhibitor 203 352 IPR032675 -
Accr1g00882 1010 ProSiteProfiles Protein kinase domain profile. 685 972 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr1g00882 1010 FunFam Leucine-rich repeat receptor-like protein kinase TDR 303 615 - -
Accr1g00882 1010 FunFam Receptor-like protein kinase HSL1 isoform A 27 177 - -
Accr1g00882 1010 Gene3D Transferase(Phosphotransferase) domain 1 765 982 - -
Accr1g00882 1010 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 339 972 - -
Accr1g00882 1010 ProSiteProfiles Leucine-rich repeat profile. 237 259 IPR001611 GO:0005515
Accr1g00882 1010 Pfam Leucine rich repeat N-terminal domain 29 64 IPR013210 -
Accr1g00882 1010 Pfam Protein kinase domain 687 969 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr1g00882 1010 ProSitePatterns Serine/Threonine protein kinases active-site signature. 823 835 IPR008271 GO:0004672|GO:0006468
Accr1g00882 1010 Pfam Leucine rich repeat 108 151 IPR001611 GO:0005515
Accr1g00882 1010 ProSitePatterns Protein kinases ATP-binding region signature. 691 715 IPR017441 GO:0005524
Accr1g00882 1010 FunFam Kinase family with leucine-rich repeat domain-containing protein 765 982 - -
Accr1g00882 1010 Gene3D Ribonuclease Inhibitor 27 202 IPR032675 -
Accr1g00882 1010 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Accr1g00882 1010 Gene3D Ribonuclease Inhibitor 353 618 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g00882 Accr-Chr1 19662671 19666569 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g00882 30 1009 Receptor kinase-like Gene Family AT5G25930 49.396 0.0 915
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Accr1g00882 Pkinase 1.7e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g00882 - - gmx:100798963 1238.79