Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g00873 ATGAGTTTCCCAGAAAAAGATCATAGAGAGAAGAAGATGATAACCAAGAAAGAGAGAGGTTCAATACTTGAAATTTTCAGATATGCTGAGTGGACTGATGTTGTGCTTATGTTGTTGGGAGCTTTGGGAGCAATAGGAGATGGTATGTCCACAAACGTTTTGCTTGTTTTTGCTAGCCGAATCATGAACAGCTTAGGTAATGGGAATGCTCAGCAACAACAAAATAATGGTGGGAATTTTTCCATGGCCGAGGTTGACAAGTGCAGTTTATATTTTATTTACTTGGGATTAGCAGTCATGGCGTTAGCCTTCATGGAAGGGTATTGCTGGAGCAAAACAAGCGAGAGGCAGGTATTGAGAATTCGGTTCAAGTATTTGGAAGCTGTGCTGAGACAAGAAGTGGGGTTCTTCAATTCCCAAGAATCAACTACTTCAGACATAATAAACAGCATATCAAAGGATACTTCCCTCTTCCAAGAACTTCTCAGTGAAAAGGTGCCTCTATTTTTGATGCATTCATCATCATTCATCTCAGGGATAACATTCTCAACGTACTTCTCATGGAGACTAGCAATAGTATCATACCCAACACTTCTTCTTCTGATAATACCAGGAATGCTATATGGGAAATACCTAATCTTCTTATCAAACAAATCCCACAAAGAGTATAGCAAGGCAAACGCCATTGTAGAGCAGGCTTTAAGCTCTATAAAGACCGTGTATTCGTTCACAGCAGAGAGAAGAATCATGGAGAGATATAAAGCAATACTTGAGAGAATCTCAAGGCTTGGAATGAAACAAGGCATAGCTAAGGGTTTGGCTGTGGGAAGCTCTGGCTTGTCTTTTGCTATTTGGGCTTTTATGGCTTGGTATGGAAGTCGTTTGGTTATGTACAAAGGTGAAAGTGGTGGAAGGATTTATGCATCTGCCATTTGCTTCATCATGAGTGGACTATCACTTGGAGTTGCACTTCCTGACCTTAAGTACTTCACAGAAGCATCAGTTGCAGCTTCAAGATTATTTGATATGATTGACCGAGTACCGACAATTGATAGTGAAGACACAAGAGGGATTGTATTAGATTCCATGACTGGAAAGTTACAATTTGAGCATGTGAAATTCAGATACCCTTCACGTCCGGATTCAATTGTTCTTAAGGATTTCAATCTCACTGTTGAATCTGGCACAACCGTGGCTCTTGTTGGTGCAAGTGGAAGTGGTAAATCCACAGCAATAGGATTAGTGCAAAGGTTTTATGATGCAGATGAAGGTTATGTGAAGGTTGATGGTGTGGATATAAGAAGCCTACAGTTGAAATGGATAAGAGGGAAAATGGGACTTGTGAGCCAAGAAGCAGCACTGTTTGGGACTTCAATAAAGGAGAATATTATGTTTGGGAAGGCAGATGCTACAATGGAGGAAGTAATTGCTGCAGCCATGGCTGCCAATGCTCATAACTTTATTAGGCAGCTTCCTGAAGGTTATGAGACTAGAATTGGAGAAAGAGGGGCACTTCTATCAGGGGGACAAAAGCAGAGAATAGCTATTGCAAGAGCCATCATTAAGAATCCAGTGATTCTCCTACTTGATGAAGCAACTAGTGCTCTTGATTCTGAATCAGAACTATTAGTTCAGAATGCACTTGATCAGGCCTCCATGGGAAGAACCACTATGGTTATTTCTCACAAGCTATCAACAGTTAGAAATGCAGACCTCATAGCAGTTGTCAATTGTGGGAGTATTATTGAAACAGGTACACACAACGAACTCCTCAACCGCGAAGAAGGGCACTACGCGAAGCTAGCGAAGTTGCAATTCAGTTGCGAAGAACAAGTGCAGAACCCGGATCAGACTATTTCTTCTGTAGCAAGAAGCAGTGCTGGTAGACCAAGTACTGCACGGTCAAGTCCTTCAGTTTTCCCAAAATCACCACTGCCTGATACTACTGCCCCACCACTTGATAAGTCTCACCCTCCGCCTTCTTTACCGCGTCTTCTTTCTCTTAATGCTCCTGAATGGAAACAAGGTCTTGTTGGAAGCCTCTCAGCTATAGCCTTTGGCTCAATTCAACCCATATATGCTTTGACCATTGGGGGTATGATTTCTGCATTTTTTGTTCGAAGCCATGAGGAAATGAAACATAGGATCAGAACTTATTCCTTTATTTTCTCTTCCTTAGCCCTTGCTTCTATAATTCTCAATCTCTTCCAACACTACAATTTTGCCTACATGGGAGAGAAACTAACAAAGAGGATCAGGTTACAAATGCTAGAAAAGATCTTAACCTTTGAAACTGCCTGGTTTGATGAGGAACAAAACTCTAGTGGAGCCTTATGCTCAAGGTTGAGCAATGAGGCTTCCATGGTGAAATCACTCGTAGCAGACCGCGTCTCTTTGATGGTTCAAACCACTTCTGCTGTCACAATCGCGATGATCATTGGGCTTATTGTGGCTTGGAAGCTTGCACTTGTTATGATAGCTGTACAACCACTGACAATATTTTGCTTCTATATAAGAAAAGTGCTGCTCTCCACACTTTCAACTAATTTTGTCAAGGCTCAGAATCATAGCACACAAATTGCAGTAGAAGCTGTTTATAACCATAAAATTGTGATTTCCTTTGGAAGCAACAAGAAAGTTGTACAACTATTTGATGAAGCTCAAGAGGCACCTAGGAAGGAAGCCAGGAAGAAGTCTTGGCTAGCTGGGATTGGAATGGGTTCGGCTCAGTGCCTAACTTTCATGACATGGGCTTTGGATTTTTGGTATGGTGGGAAATTAATGCAGCAAGGAGAGATATCAGCAGGGGATGTGTTCAAGACATTTTTTGTATTGGTGAGTACAGGCAAAGTCATAGCTGAAGCTGGAAGCATGACTTCTGATCTTGCCAAGGGTTCTGCAGCAGTAGCATCTGTTTTCGCAATTCTTGATAGACAGTCATTAATCCCAAAGGGTGGGAATGGCATGAATGGGAGTAAGTTGTTGAAAATGAGAGGAAAGATAGAGATGAAGGATGTTGATTTTGCATACCCAAGCAGGCCAGGGACTCCAATACTGAGGAAATTTTGCTTGGAGGTGAAGTCAGGAACAAGTATAGGAGTGGTGGGAAAAAGTGGGAGTGGAAAATCAACAGTGATAGCTTTAATTCAGAGATTCTACGATGTTCAGAGAGGATCCATAAAAGTGGATGGGATAGACATAAGAGAACTAGACATTCAATGGTACAGGAAACACACAGCACTGGTTAGCCAAGAACCTGTAATCTACTCAGGAAGCATACGAGACAACATCTTATTTGGAAAGCAAGAGGCAACAGAAAGTGAAGTTGTGGAAGCTGCAAGATCTGCTAATGCTCATGACTTCATTTCGTCACTGAGAGATGGGTATGAAACAGCATGTGGAGAAAGAGGAGTACAACTATCAGGAGGGCAAAAGCAGAGAATAGCAATAGCTAGAGCCATAATTAGAAACCCAACAATACTTCTGCTTGATGAAGCGACCAGTGCCTTAGACGTTGAATCAGAACAAGTTGTACAAGAAGCACTTGATAGGATAATGGTTGGTAGAACTACAGTGGTGGTGGCCCACAGGCTTAACACTATTAAAGAGCTTCAATTAACTGCATATGTTTCAGACGGAAAGGTTGTTGAACAAGGAACCTATTCACAGCTTTGGCACAAGAGAGGCGCTTTCTTTAGACTTGCAAGCCATCAAACTTAG 3720 0.418 MSFPEKDHREKKMITKKERGSILEIFRYAEWTDVVLMLLGALGAIGDGMSTNVLLVFASRIMNSLGNGNAQQQQNNGGNFSMAEVDKCSLYFIYLGLAVMALAFMEGYCWSKTSERQVLRIRFKYLEAVLRQEVGFFNSQESTTSDIINSISKDTSLFQELLSEKVPLFLMHSSSFISGITFSTYFSWRLAIVSYPTLLLLIIPGMLYGKYLIFLSNKSHKEYSKANAIVEQALSSIKTVYSFTAERRIMERYKAILERISRLGMKQGIAKGLAVGSSGLSFAIWAFMAWYGSRLVMYKGESGGRIYASAICFIMSGLSLGVALPDLKYFTEASVAASRLFDMIDRVPTIDSEDTRGIVLDSMTGKLQFEHVKFRYPSRPDSIVLKDFNLTVESGTTVALVGASGSGKSTAIGLVQRFYDADEGYVKVDGVDIRSLQLKWIRGKMGLVSQEAALFGTSIKENIMFGKADATMEEVIAAAMAANAHNFIRQLPEGYETRIGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESELLVQNALDQASMGRTTMVISHKLSTVRNADLIAVVNCGSIIETGTHNELLNREEGHYAKLAKLQFSCEEQVQNPDQTISSVARSSAGRPSTARSSPSVFPKSPLPDTTAPPLDKSHPPPSLPRLLSLNAPEWKQGLVGSLSAIAFGSIQPIYALTIGGMISAFFVRSHEEMKHRIRTYSFIFSSLALASIILNLFQHYNFAYMGEKLTKRIRLQMLEKILTFETAWFDEEQNSSGALCSRLSNEASMVKSLVADRVSLMVQTTSAVTIAMIIGLIVAWKLALVMIAVQPLTIFCFYIRKVLLSTLSTNFVKAQNHSTQIAVEAVYNHKIVISFGSNKKVVQLFDEAQEAPRKEARKKSWLAGIGMGSAQCLTFMTWALDFWYGGKLMQQGEISAGDVFKTFFVLVSTGKVIAEAGSMTSDLAKGSAAVASVFAILDRQSLIPKGGNGMNGSKLLKMRGKIEMKDVDFAYPSRPGTPILRKFCLEVKSGTSIGVVGKSGSGKSTVIALIQRFYDVQRGSIKVDGIDIRELDIQWYRKHTALVSQEPVIYSGSIRDNILFGKQEATESEVVEAARSANAHDFISSLRDGYETACGERGVQLSGGQKQRIAIARAIIRNPTILLLDEATSALDVESEQVVQEALDRIMVGRTTVVVAHRLNTIKELQLTAYVSDGKVVEQGTYSQLWHKRGAFFRLASHQT 1239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g00873 1239 SMART AAA_5 1028 1220 IPR003593 GO:0016887
Accr1g00873 1239 SMART AAA_5 394 586 IPR003593 GO:0016887
Accr1g00873 1239 FunFam ABC transporter B family member 4 357 612 - -
Accr1g00873 1239 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 367 603 IPR003439 GO:0005524
Accr1g00873 1239 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1001 1237 IPR003439 GO:0005524
Accr1g00873 1239 MobiDBLite consensus disorder prediction 615 661 - -
Accr1g00873 1239 CDD ABC_6TM_Pgp_ABCB1_D1_like 37 340 - -
Accr1g00873 1239 CDD ABC_6TM_Pgp_ABCB1_D2_like 666 982 - -
Accr1g00873 1239 Pfam ABC transporter 385 534 IPR003439 GO:0005524
Accr1g00873 1239 ProSitePatterns ABC transporters family signature. 1140 1154 IPR017871 GO:0005524|GO:0016887
Accr1g00873 1239 FunFam Putative ABC transporter B family member 8 647 986 - -
Accr1g00873 1239 FunFam ABC multidrug transporter SitT 991 1239 - -
Accr1g00873 1239 Gene3D - 357 610 IPR027417 -
Accr1g00873 1239 Pfam ABC transporter transmembrane region 681 947 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Accr1g00873 1239 Pfam ABC transporter transmembrane region 39 302 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Accr1g00873 1239 Gene3D - 991 1239 IPR027417 -
Accr1g00873 1239 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 358 606 IPR027417 -
Accr1g00873 1239 MobiDBLite consensus disorder prediction 615 643 - -
Accr1g00873 1239 Pfam ABC transporter 1022 1168 IPR003439 GO:0005524
Accr1g00873 1239 Gene3D ABC transporter type 1, transmembrane domain 24 915 IPR036640 GO:0005524|GO:0016020
Accr1g00873 1239 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 38 332 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Accr1g00873 1239 ProSitePatterns ABC transporters family signature. 506 520 IPR017871 GO:0005524|GO:0016887
Accr1g00873 1239 SUPERFAMILY ABC transporter transmembrane region 25 351 IPR036640 GO:0005524|GO:0016020
Accr1g00873 1239 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 994 1238 IPR027417 -
Accr1g00873 1239 MobiDBLite consensus disorder prediction 644 659 - -
Accr1g00873 1239 PANTHER ABC TRANSPORTER B FAMILY 5 689 IPR039421 -
Accr1g00873 1239 CDD ABC_MTABC3_MDL1_MDL2 369 605 - -
Accr1g00873 1239 FunFam ABC transporter B family member 1 24 365 - -
Accr1g00873 1239 SUPERFAMILY ABC transporter transmembrane region 659 977 IPR036640 GO:0005524|GO:0016020
Accr1g00873 1239 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 677 964 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g00873 Accr-Chr1 19265041 19277022 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g00873 24 1238 Calmodulin-binding Proteins AT2G36910 42.594 0.0 971
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g00873 K05658 - gmx:100801088 1919.44